PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0118
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 332aa    MW: 36665.5 Da    PI: 6.3102
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0118genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.47.9e-30132193159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg+nWrKYGqK++ gs+fpr+YYrCt++   gC ++k+v+rs++dp++++itY g+H+++
  Gh_A11G0118 132 LDDGFNWRKYGQKDILGSRFPRGYYRCTHRninGCLATKQVQRSDDDPTIFDITYVGTHTCR 193
                  59***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.538127190IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-28127194IPR003657WRKY domain
SuperFamilySSF1182903.79E-26131193IPR003657WRKY domain
SMARTSM007741.2E-39132194IPR003657WRKY domain
PfamPF031061.6E-27133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEKMGEWEQR SLVSELTQGR EVARQLQAHL NGASSLSYDI ETREVLVQKI EASYEKALSI  60
LNCNVNTSSA SAVVPLTPVI RMPESPNSRC GSPPSEDSDR GFRDSDASKK RKAPRWTQQV  120
RVTPGTALEG TLDDGFNWRK YGQKDILGSR FPRGYYRCTH RNINGCLATK QVQRSDDDPT  180
IFDITYVGTH TCRNVTSHLM SEKNQEQGHS ASSMAAVEPQ SSSSSQDLLL NFQKGLKVKT  240
QDLEDQTYAS LIPYTSSTSN VVFSWPSVID NNRNFVSPAT SGTDFGFGTC DDQIIQASAA  300
ASVTSSPTVG LDHFHQLDGN FTFDNNGFFR HG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-21132193869OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.92120.0ovule| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738641180.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0311090.0KF031109.1 Gossypium hirsutum WRKY transcription factor 87 (WRKY87) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708940.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A1U8L2P30.0A0A1U8L2P3_GOSHI; probable WRKY transcription factor 53
STRINGGorai.007G014600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-55WRKY family protein