PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G0091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 280aa MW: 31915.6 Da PI: 6.7453 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.9e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++v ++G g+W+++a g+ R +k+c++rw +yl Gh_A11G0091 16 KGLWSPEEDLKLRNYVLKHGHGCWTSVAINAGLQRNGKSCRLRWINYL 63 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 1e-15 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E++ ++ ++++lG++ W+ Ia+ ++ gRt++++k++w+++l Gh_A11G0091 69 RGMFSPQEEDTILTLHHLLGNK-WSQIAQNLP-GRTDNEIKNYWHSHL 114 788*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.132 | 11 | 67 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-22 | 12 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.71E-29 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.93E-11 | 19 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-25 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.865 | 68 | 118 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.7E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.99E-11 | 72 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MGSRSSDQKP RAKHRKGLWS PEEDLKLRNY VLKHGHGCWT SVAINAGLQR NGKSCRLRWI 60 NYLRPGLKRG MFSPQEEDTI LTLHHLLGNK WSQIAQNLPG RTDNEIKNYW HSHLKKRVAK 120 AEELEPQTRT PYTTSSSENT DSALSPRNLA NMRIPSFESF HHIEKPLIST DQTVARQLNF 180 SNEPHGSLMP TLLFAEWLSI DQEGESVTNS ASLNGFNHGL NSKFQDPFLS AYLGSFDIDF 240 PDGLSYASVN DEMFTSEFKF ETQISEELLG NEINNDLMYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-23 | 16 | 118 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016709584.1 | 0.0 | PREDICTED: transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 8e-60 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A1U8L8V4 | 0.0 | A0A1U8L8V4_GOSHI; transcription factor LAF1-like | ||||
STRING | Gorai.007G011100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48920.1 | 2e-62 | myb domain protein 45 |
Publications ? help Back to Top | |||
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