PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G0082 | ||||||||
Common Name | DBP3a | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 24121.8 Da PI: 4.4054 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.7 | 1.1e-16 | 60 | 108 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa a++ a+++l+g Gh_A11G0082 60 VYRGVR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAATAYDVAALALKG 108 59***6..668*********843...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.1E-28 | 60 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.3E-29 | 60 | 124 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-10 | 60 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.56 | 60 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-18 | 60 | 117 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.18E-28 | 61 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MSESDPSSTN VPPKDQPPPP TVPIPDAPPQ EQSPKPSSTP LVSSKEGVSG NPTSRKLSAV 60 YRGVRSRSGK WVSEIREPRK TTRIWLGTYP TPEMAATAYD VAALALKGPD AELNFPDMVH 120 SYPKVGSTSA TDIRAAAASA AASRLLPKSV TNTGSLSKNE DTTSTTAMEI TCSGQEFIDE 180 EELLNFPNLM VDMAGGMLVS PPNWINSPPS DDSPDNSDVD TLWTYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-13 | 61 | 122 | 15 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.1431 | 0.0 | boll| leaf| ovule| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP780189 | 0.0 | KP780189.1 Gossypium hirsutum C-repeat binding factor 6 (CBF6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314143.1 | 1e-161 | ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9CAN9 | 3e-48 | ERF26_ARATH; Ethylene-responsive transcription factor ERF026 | ||||
TrEMBL | Q076D8 | 1e-160 | Q076D8_GOSHI; DRE-binding protein 3a | ||||
STRING | Gorai.007G010200.1 | 1e-136 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1957 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 7e-35 | ERF family protein |
Publications ? help Back to Top | |||
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