PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0077
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 23234.6 Da    PI: 9.6554
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0077genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.69.5e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien + rqvtfskRrng+lKKA+EL vLCdaevaviifs++gklye+ss
  Gh_A11G0077  9 KRIENATSRQVTFSKRRNGLLKKAYELYVLCDAEVAVIIFSHKGKLYEFSS 59
                 79***********************************************96 PP
2K-box69.88.6e-24841711097
        K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                   ++ +++l+ e++++ k+ie L+ ++R++lG++L+s+s+ eLq++e+qLe+sl++iR++K  l++eqi +l+ ke+ +qeen +L++k
  Gh_A11G0077  84 FDRYTQQLRLEAENMAKKIEFLEVSKRRMLGQNLGSCSIDELQEVENQLERSLRNIRARKGYLFKEQILQLKAKERYMQEENAKLSAK 171
                  5677899******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.001161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002657.69E-42376No hitNo description
PRINTSPR004046.3E-31323IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-33375IPR002100Transcription factor, MADS-box
PfamPF003198.2E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.64588183IPR002487Transcription factor, K-box
PfamPF014864.5E-2388171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVRGKIQMKR IENATSRQVT FSKRRNGLLK KAYELYVLCD AEVAVIIFSH KGKLYEFSSS  60
DNMQNTIERY RQYKKDVQSN IPEFDRYTQQ LRLEAENMAK KIEFLEVSKR RMLGQNLGSC  120
SIDELQEVEN QLERSLRNIR ARKGYLFKEQ ILQLKAKERY MQEENAKLSA KNNGTTCSQQ  180
NAEVETELFL GLPENRCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18179178MEF2C
5f28_B1e-18179178MEF2C
5f28_C1e-18179178MEF2C
5f28_D1e-18179178MEF2C
6byy_A1e-18179178MEF2 CHIMERA
6byy_B1e-18179178MEF2 CHIMERA
6byy_C1e-18179178MEF2 CHIMERA
6byy_D1e-18179178MEF2 CHIMERA
6bz1_A1e-18179178MEF2 CHIMERA
6bz1_B1e-18179178MEF2 CHIMERA
6bz1_C1e-18179178MEF2 CHIMERA
6bz1_D1e-18179178MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
UniprotTISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364300.0HM236430.1 Gossypium hirsutum MADS15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609908.11e-143PREDICTED: MADS-box protein AGL42-like isoform X1
SwissprotQ9FIS17e-79AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A2P5WMY41e-141A0A2P5WMY4_GOSBA; Uncharacterized protein
STRINGGorai.007G009800.11e-135(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.33e-81AGAMOUS-like 42