PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G2356
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 179aa    MW: 19964.6 Da    PI: 8.7074
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G2356genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001590112123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  Fs    L  H+r+H
  Gh_A10G2356  90 HECSICGLEFSIGQALGGHMRRH 112
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.59E-944112No hitNo description
PfamPF139122.3E-124570IPR007087Zinc finger, C2H2
SMARTSM003550.314668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1594673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
PfamPF139123.6E-1089114IPR007087Zinc finger, C2H2
PROSITE profilePS501579.78590117IPR007087Zinc finger, C2H2
SMARTSM003550.3290112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKRSFASEME NNLALANCLM LLSQGRNQYD HTIFNDSNNN NPTRVFECKT CNRQFASFQA  60
LGGHRASHKK PKLLDGSSTE NQPPAKPKTH ECSICGLEFS IGQALGGHMR RHRGGVSENH  120
HQYGPLSSSS SSQEMVTTPI VKKSNSRRVL CLDLNLTPLE NDWELFKLGK AALPIDCFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605738.11e-132PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A2P5X7391e-131A0A2P5X739_GOSBA; Uncharacterized protein
STRINGGorai.011G254200.11e-125(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-37C2H2 family protein