PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G2298 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 154aa MW: 17860.9 Da PI: 6.5636 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 19 | 70 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g++++eIrd + + +r +lg+f+taeeAa+a+++a+ +l+g+ Gh_A10G2298 19 RYRGVRRRP-WGKYASEIRDSTR---QgARLWLGTFDTAEEAARAYDRAAFNLRGH 70 6********.**********322...24**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.62E-23 | 19 | 78 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.0E-15 | 19 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.67E-28 | 19 | 77 | No hit | No description |
PROSITE profile | PS51032 | 23.894 | 19 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-34 | 19 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-31 | 19 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-12 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-12 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MEDPNKIKEK EEKGKEEVRY RGVRRRPWGK YASEIRDSTR QGARLWLGTF DTAEEAARAY 60 DRAAFNLRGH MAILNFPREY YAQLMGGSSS SPSPSPYLYP YPSSGNVHKS FDKGSSSSGE 120 QEKQVFEFEY LDDKVLEELL ETEDEKIKKK MMRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-33 | 14 | 135 | 9 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016676575.1 | 1e-110 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 9e-48 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A1U8IEF4 | 1e-108 | A0A1U8IEF4_GOSHI; ethylene-responsive transcription factor ERF098-like | ||||
STRING | Gorai.011G172800.1 | 8e-70 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 2e-36 | ERF family protein |
Publications ? help Back to Top | |||
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