PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G2246

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 861aa MW: 97001 Da PI: 8.3486

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G2246	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	434	455	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +Cr++++ G C yG++CkF H Gh_A10G2246 434 QICRYYSQ-GRCYYGENCKFLHE 455 58****.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.720.30	3.8E-8	92	140	IPR003034	SAP domain
SuperFamily	SSF68906	5.13E-7	94	140	No hit	No description
Pfam	PF02037	2.3E-9	105	139	IPR003034	SAP domain
SMART	SM00513	5.8E-5	105	139	IPR003034	SAP domain
PROSITE profile	PS50800	10.046	105	139	IPR003034	SAP domain
Gene3D	G3DSA:4.10.1000.10	2.2E-8	430	459	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.014	430	457	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.9E-4	431	456	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-7	432	455	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.4E-5	434	455	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS51349	110.448	495	854	IPR012133	Alpha-hydroxy acid dehydrogenase, FMN-dependent
Gene3D	G3DSA:3.20.20.70	2.1E-148	500	853	IPR013785	Aldolase-type TIM barrel
SuperFamily	SSF51395	1.22E-99	500	851	No hit	No description
CDD	cd02809	1.51E-152	504	846	No hit	No description
Pfam	PF01070	3.3E-131	510	850	IPR000262	FMN-dependent dehydrogenase
PROSITE pattern	PS00557	0	747	753	IPR008259	FMN-dependent alpha-hydroxy acid dehydrogenase, active site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0010181	Molecular Function	FMN binding
GO:0016491	Molecular Function	oxidoreductase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence Send to blast
MAISDSDPES SQDYNEIFEE KDCCNNSESD PDYHLGTDSS YSNDKDTSTK FHNFFSFLLV 60 FVYICSLAKH SDFSNVKDPE MGMDFSHIDD KSYENVQNII KDGRLEKVKV DECKVYLRRN 120 GLRLSGNKDV LIQRIKEHLE ISNGGGEKKY PLSSFVVNCT GDACTGDVVM FEQNVYEMFN 180 IASQSASGPP CGTRIVVGRI VKESYGSAKQ QHTFTLTNSI HQRWKDEGER QKVLVEKHSR 240 GSLARSDREV RIQEKERRKI LRSNRILKRE EKNKKKSQTQ LSSTTTTKEI QPRQPSSYTN 300 SGFIAPQHQQ SGSTVEGGHL TNQNHGSGLL FDLEKLSIRS RQSVSSHNNH LRDQVPHNLV 360 ETSGIQEVRL QKGDKIYLNS IQPNFPMDRY WNLTNGRFTA NEFPETNYRR QWLRNMDHCH 420 PATPPQRQGF LSQQICRYYS QGRCYYGENC KFLHEPRELH VAEERGAKGN STAIFFFRSF 480 CRNIARILAI KETRIMTGEP VNVNEFRELA RQALPKMYYD FYTGGAEDQC TLKENEEAFR 540 RIIIQPRILR NVRCIDLSTT VLGYNISMPV MIAPTSLQKL ANPEGEIATA RAASACNTIM 600 VLSTSSTYSL EEVAACCDAI RFFQLYVYKR RDISAKLVQR AENNGYKAIV LTVDSPRLGR 660 READVKNKLV VPPLKNLEGL LPTKFVSDEK GSGLAALASG TLDASFCWED ITWLKSITNL 720 PILIKGVLTR EDAIKALEVG VDGMIVSNHG GRQLDYSPAT ISVLEEVVDA VGGKVPVLVD 780 GGIRRGTDIF KALALGAQAV LVGRAVVYGL AAKGEKGVNR VLEMLKEELE LTMALSDCCS 840 VKEISRSHVR TKHDQQLRSM L

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence Send to blast

MAISDSDPES SQDYNEIFEE KDCCNNSESD PDYHLGTDSS YSNDKDTSTK FHNFFSFLLV  60
FVYICSLAKH SDFSNVKDPE MGMDFSHIDD KSYENVQNII KDGRLEKVKV DECKVYLRRN  120
GLRLSGNKDV LIQRIKEHLE ISNGGGEKKY PLSSFVVNCT GDACTGDVVM FEQNVYEMFN  180
IASQSASGPP CGTRIVVGRI VKESYGSAKQ QHTFTLTNSI HQRWKDEGER QKVLVEKHSR  240
GSLARSDREV RIQEKERRKI LRSNRILKRE EKNKKKSQTQ LSSTTTTKEI QPRQPSSYTN  300
SGFIAPQHQQ SGSTVEGGHL TNQNHGSGLL FDLEKLSIRS RQSVSSHNNH LRDQVPHNLV  360
ETSGIQEVRL QKGDKIYLNS IQPNFPMDRY WNLTNGRFTA NEFPETNYRR QWLRNMDHCH  420
PATPPQRQGF LSQQICRYYS QGRCYYGENC KFLHEPRELH VAEERGAKGN STAIFFFRSF  480
CRNIARILAI KETRIMTGEP VNVNEFRELA RQALPKMYYD FYTGGAEDQC TLKENEEAFR  540
RIIIQPRILR NVRCIDLSTT VLGYNISMPV MIAPTSLQKL ANPEGEIATA RAASACNTIM  600
VLSTSSTYSL EEVAACCDAI RFFQLYVYKR RDISAKLVQR AENNGYKAIV LTVDSPRLGR  660
READVKNKLV VPPLKNLEGL LPTKFVSDEK GSGLAALASG TLDASFCWED ITWLKSITNL  720
PILIKGVLTR EDAIKALEVG VDGMIVSNHG GRQLDYSPAT ISVLEEVVDA VGGKVPVLVD  780
GGIRRGTDIF KALALGAQAV LVGRAVVYGL AAKGEKGVNR VLEMLKEELE LTMALSDCCS  840
VKEISRSHVR TKHDQQLRSM L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gyl_A	1e-146	499	854	2	359	GLYCOLATE OXIDASE
1gyl_B	1e-146	499	854	2	359	GLYCOLATE OXIDASE
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX576968	2e-80	JX576968.1 Gossypium hirsutum clone NBRI_GE8699 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5RR28	0.0	A0A2P5RR28_GOSBA; Uncharacterized protein
STRING	Gorai.011G062300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM290	3	3