PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G2216 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 289aa MW: 31538.4 Da PI: 9.0461 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.8 | 1.3e-39 | 37 | 97 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Gh_A10G2216 37 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 97 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 7.1E-34 | 39 | 95 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-27 | 40 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.525 | 41 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 43 | 79 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MLRNCEKMVA VITSSATNEW PQKLMEKPSQ EQQQVQQQQA LKCPRCDSSN TKFCYYNNYS 60 LSQPRHFCKA CKRYWTRGGT LRNVPVGGGC RKNKRVKRQT VSASTPPSIG GASPTSGGGV 120 VNPNSTTSSH HINPLFYGLT ANDPYHDVIN LPFSRSSTVT GYDLQPQMSG LGLGFSSGDN 180 TDHYPPLLSS YTNIFGSSSS SSTTTTTPTI ASLLASTLNQ HKFINGGVKN TEALPPFQDL 240 QTTAMKDIKV PCQNHLEQIT LPDPSLYWST NIGVWHDPTN IGSSVTSLI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU532295 | 0.0 | EU532295.1 Gossypium barbadense clone I10-23 ISSR marker genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016710980.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
TrEMBL | A0A1U8L8Q2 | 0.0 | A0A1U8L8Q2_GOSHI; dof zinc finger protein DOF3.1-like | ||||
STRING | Gorai.011G029300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4709 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.1 | 1e-36 | Dof family protein |