PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G2052
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 413aa    MW: 44916.2 Da    PI: 6.5925
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G2052genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-1760105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd  l ++v+++G ++W++Iar ++ gR++k+c++rw + 
      Gh_A10G2052  60 KGPWSPEEDAVLSRLVAKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 105
                      79******************************.***********985 PP
2Myb_DNA-binding56.65.9e-18112156147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
      Gh_A10G2052 112 RKPFTDEEDRIIISAHAIHGNK-WASIAKLLP-GRTDNAIKNHWNST 156
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.34255106IPR017930Myb domain
SuperFamilySSF466895.39E-3158153IPR009057Homeodomain-like
SMARTSM007172.4E-1559108IPR001005SANT/Myb domain
PfamPF002497.0E-1760105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2661113IPR009057Homeodomain-like
CDDcd001671.72E-1462104No hitNo description
PROSITE profilePS5129426.922107161IPR017930Myb domain
SMARTSM007172.0E-17111159IPR001005SANT/Myb domain
PfamPF002495.5E-16112156IPR001005SANT/Myb domain
CDDcd001674.41E-13114157No hitNo description
Gene3DG3DSA:1.10.10.605.0E-24114160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MEDEKESNRQ DSPAAGGSGS GSGGDELELI VAESELGGGG GSGVGGGGGS SSNNNNTRVK  60
GPWSPEEDAV LSRLVAKFGA RNWSLIARGI PGRSGKSCRL RWCNQLDPCL KRKPFTDEED  120
RIIISAHAIH GNKWASIAKL LPGRTDNAIK NHWNSTLRRR CMELGRFKPG PADTMEDGSF  180
ERTKASSEET LSVGDINHFK HLEGRDMVMD DRRNLQEDKP PIQEEQFAIE PKNHPAVCRP  240
VARVSAFSRY NTPSSSRTES GMTSRIPVQG PLAQSSRPDW GVGKILEDLR CEPVIPLRCG  300
FGCCSTPCGG HSRTSLLGPE FVDYEEPPIF SSHELISIAT DLNNIAWIKS GLENSCVRIP  360
SNSTSQRMSQ VSDRHTKSDP MCFSDGQSKL TGMSTEVLPT QTCTMRSEVE GLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-40591606107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.115594e-53boll| ovule| stem
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016742161.10.0PREDICTED: uncharacterized protein LOC107951568 isoform X2
SwissprotQ425753e-88MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A1U8NT550.0A0A1U8NT55_GOSHI; uncharacterized protein LOC107951568 isoform X2
STRINGGorai.011G278500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-111myb domain protein 109
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]