PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G1979 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 808aa MW: 90028.7 Da PI: 5.3415 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 388.5 | 7.6e-119 | 434 | 804 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+av+++d + a++l++++++++sp gd m+R+a+yf +L+arla+s++++y al +++ts +++l+a++lf ++P+ k+s++ Gh_A10G1979 434 LRTLLTLCAQAVAADDRRSANELIKQIRQHSSPMGDGMRRIAHYFIDGLEARLAGSGTQIYTALITKPTS---AADVLKAHHLFLAACPFKKLSNFFS 528 5789**************************************************************9999...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I++ +e + r+HiiDf+i +G+QWp+L++ L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++Ae+++vpfef++ +a++++++++e+L Gh_A10G1979 529 NKTIMNLAEDAARLHIIDFGILYGFQWPCLIRRLSSRPGGPPKLRITGIDLPQPGfrPAERVEETGRRLANYAETFKVPFEFHA-IAQKWDTIQIEDL 625 ******************************************************9*****************************.7************ PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++++E+l+Vn++++l +llde+v +es+r +vL+l+++++P+v+++ + ++++ F +rf eal ++s+lfd+le+++pre er+ +Ere++g+ Gh_A10G1979 626 GIDRDEVLVVNCMYRLRNLLDETVIVESPRIKVLNLIRKMNPDVFILGIVNGAYSAPFFITRFREALFHFSTLFDMLETNVPREIPERMLIEREIFGW 723 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 e++nv+acegaer+er et+++W++r ++aG++++pl+++++k ak + + + + + ++e++ +l++gWk+r ++++S W Gh_A10G1979 724 EAMNVIACEGAERIERPETYKQWQMRNTRAGLRQLPLNKEIMKIAKERVDTGYHKDFVIDEDNRWLLQGWKGRIVYALSTW 804 ***************************************************99888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.259 | 408 | 785 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.6E-116 | 434 | 804 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 808 aa Download sequence Send to blast |
MDGWLKGSNS FVDRVGLNDG TVLALSGRDF DNRFKNEKCV DIPSSEPVMI PGNSGNVVSS 60 LGTCSDRVGL NDGTVLALSG RDFASQFKNE NYVDVLPLEH VMVPGNLVPS FGTCSDIVGL 120 NVDNQPVPIP GNSVPSSSVN EGDLHEDFDF SDEVLKYISQ MLMEEDMEDK TCMFKESSAA 180 LQAAEKAFYE VLGERYPPSP KYDGDQNQES SDESHGQNCW GCSSASISSG SVVDPGHNHD 240 FSEQRALNFP SQASSSHSSG NSTGSVVDGY ADSPVSTVRL PEIFNNSESA IQFRKGFEEA 300 SKFLPNGGSL FVHGENDGLF LKELKEETKD VAVDKVDKDE ISRDGSRGKK KPYPEDLSLE 360 CGRSTKQSLV YTESAVSPEM FDMVLLNCQS VTELQKVLQD ETSKNVQQNG QLKGSNGGKA 420 RGKKHGGKRN MVDLRTLLTL CAQAVAADDR RSANELIKQI RQHSSPMGDG MRRIAHYFID 480 GLEARLAGSG TQIYTALITK PTSAADVLKA HHLFLAACPF KKLSNFFSNK TIMNLAEDAA 540 RLHIIDFGIL YGFQWPCLIR RLSSRPGGPP KLRITGIDLP QPGFRPAERV EETGRRLANY 600 AETFKVPFEF HAIAQKWDTI QIEDLGIDRD EVLVVNCMYR LRNLLDETVI VESPRIKVLN 660 LIRKMNPDVF ILGIVNGAYS APFFITRFRE ALFHFSTLFD MLETNVPREI PERMLIEREI 720 FGWEAMNVIA CEGAERIERP ETYKQWQMRN TRAGLRQLPL NKEIMKIAKE RVDTGYHKDF 780 VIDEDNRWLL QGWKGRIVYA LSTWVPAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-50 | 441 | 806 | 26 | 380 | Protein SCARECROW |
5b3h_A | 4e-50 | 441 | 806 | 25 | 379 | Protein SCARECROW |
5b3h_D | 4e-50 | 441 | 806 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.12526 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017649093.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A2P5Y7X2 | 0.0 | A0A2P5Y7X2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G266200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |