PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1979
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 808aa    MW: 90028.7 Da    PI: 5.3415
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1979genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS388.57.6e-1194348041373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ cA+av+++d + a++l++++++++sp gd m+R+a+yf  +L+arla+s++++y al +++ts    +++l+a++lf  ++P+ k+s++  
  Gh_A10G1979 434 LRTLLTLCAQAVAADDRRSANELIKQIRQHSSPMGDGMRRIAHYFIDGLEARLAGSGTQIYTALITKPTS---AADVLKAHHLFLAACPFKKLSNFFS 528
                  5789**************************************************************9999...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++I++ +e + r+HiiDf+i +G+QWp+L++ L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfef++ +a++++++++e+L
  Gh_A10G1979 529 NKTIMNLAEDAARLHIIDFGILYGFQWPCLIRRLSSRPGGPPKLRITGIDLPQPGfrPAERVEETGRRLANYAETFKVPFEFHA-IAQKWDTIQIEDL 625
                  ******************************************************9*****************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   ++++E+l+Vn++++l +llde+v +es+r +vL+l+++++P+v+++   +  ++++ F +rf eal ++s+lfd+le+++pre  er+ +Ere++g+
  Gh_A10G1979 626 GIDRDEVLVVNCMYRLRNLLDETVIVESPRIKVLNLIRKMNPDVFILGIVNGAYSAPFFITRFREALFHFSTLFDMLETNVPREIPERMLIEREIFGW 723
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  e++nv+acegaer+er et+++W++r ++aG++++pl+++++k ak  + + + + + ++e++ +l++gWk+r ++++S W
  Gh_A10G1979 724 EAMNVIACEGAERIERPETYKQWQMRNTRAGLRQLPLNKEIMKIAKERVDTGYHKDFVIDEDNRWLLQGWKGRIVYALSTW 804
                  ***************************************************99888************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.259408785IPR005202Transcription factor GRAS
PfamPF035142.6E-116434804IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MDGWLKGSNS FVDRVGLNDG TVLALSGRDF DNRFKNEKCV DIPSSEPVMI PGNSGNVVSS  60
LGTCSDRVGL NDGTVLALSG RDFASQFKNE NYVDVLPLEH VMVPGNLVPS FGTCSDIVGL  120
NVDNQPVPIP GNSVPSSSVN EGDLHEDFDF SDEVLKYISQ MLMEEDMEDK TCMFKESSAA  180
LQAAEKAFYE VLGERYPPSP KYDGDQNQES SDESHGQNCW GCSSASISSG SVVDPGHNHD  240
FSEQRALNFP SQASSSHSSG NSTGSVVDGY ADSPVSTVRL PEIFNNSESA IQFRKGFEEA  300
SKFLPNGGSL FVHGENDGLF LKELKEETKD VAVDKVDKDE ISRDGSRGKK KPYPEDLSLE  360
CGRSTKQSLV YTESAVSPEM FDMVLLNCQS VTELQKVLQD ETSKNVQQNG QLKGSNGGKA  420
RGKKHGGKRN MVDLRTLLTL CAQAVAADDR RSANELIKQI RQHSSPMGDG MRRIAHYFID  480
GLEARLAGSG TQIYTALITK PTSAADVLKA HHLFLAACPF KKLSNFFSNK TIMNLAEDAA  540
RLHIIDFGIL YGFQWPCLIR RLSSRPGGPP KLRITGIDLP QPGFRPAERV EETGRRLANY  600
AETFKVPFEF HAIAQKWDTI QIEDLGIDRD EVLVVNCMYR LRNLLDETVI VESPRIKVLN  660
LIRKMNPDVF ILGIVNGAYS APFFITRFRE ALFHFSTLFD MLETNVPREI PERMLIEREI  720
FGWEAMNVIA CEGAERIERP ETYKQWQMRN TRAGLRQLPL NKEIMKIAKE RVDTGYHKDF  780
VIDEDNRWLL QGWKGRIVYA LSTWVPAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-5044180626380Protein SCARECROW
5b3h_A4e-5044180625379Protein SCARECROW
5b3h_D4e-5044180625379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.125260.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649093.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A2P5Y7X20.0A0A2P5Y7X2_GOSBA; Uncharacterized protein
STRINGGorai.011G266200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein