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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_A10G1860 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
AP2 |
| Protein Properties |
Length: 474aa MW: 51740.2 Da PI: 8.1138 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A10G1860 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 51.4 | 2.7e-16 | 174 | 223 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I++ + k+++lg f+ta Aa+a+++a+ k++g
Gh_A10G1860 174 SQYRGVTFYRRTGRWESHIWE------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 223
78*******************......55************************997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 474 aa
Download sequence Send
to blast |
MLDLNLDIVS SESSCDENIN NSSSNNNNNV LVNGGAVTLT QMEDSGSTKS SIINDEDFPS 60
NAAVRDENSS DDASATFVFD ILKKETGDKT TNNFNTIVKK VENPSPDFVT RQLFPVSGEK 120
AGGLELEFGS TKPLARPQWL NLSYAESTGE AELTTFQIKP QPRKSRRGPR SRSSQYRGVT 180
FYRRTGRWES HIWECGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF TLSDYEEDMK 240
QMKNMSKEEF VHALRRQSNG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK AYDMAAMKCS 300
GSEAVTNFGP STYEGGGNGH YNLDLSLGIS ATRNGSNVTG DFIFRNTTGT GESSGSVSVG 360
VQPDHCQTIA SWHPPMLSNV YPAVLLPYNE GRAIQKRPEA VSSNWAWQMQ GTGKIITPTP 420
VFPIAASSGF SSSVAIASSS SSLSPAFNNS GRNPCFPAPA TSTNNTSHYY NYRS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX590337 | 3e-84 | JX590337.1 Gossypium hirsutum clone NBRI_GE25232 microsatellite sequence. |
