PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G1836 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 685aa MW: 75653.1 Da PI: 6.7857 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.1 | 1.6e-23 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF + +++ Gh_A10G1836 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLR--ADNGD 214 89****************************985444444..8999*********************************************3..47788 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ Gh_A10G1836 215 LCVGIRRA 222 8****996 PP | |||||||
2 | Auxin_resp | 112.5 | 4.1e-37 | 281 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Pr+st+eF+vk+++v++a+++++ +GmRfkm fetedss++++ +Gt++ + +dp+rWpnS+Wr+L+ Gh_A10G1836 281 AASHAASGQPFEVVYYPRTSTPEFCVKASSVRAAMQIQWYPGMRFKMPFETEDSSRISWfMGTISTAQVVDPIRWPNSPWRLLQ 364 678899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.23E-29 | 113 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-36 | 116 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.70E-22 | 120 | 221 | No hit | No description |
SMART | SM01019 | 6.6E-22 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-21 | 121 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.183 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.0E-32 | 281 | 364 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 20.044 | 599 | 682 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MITVMDSRKE VVKNSEKCLD PQLWHACAGG MVQMPSVNSK VFYFPQGHAE HANGNVDFGN 60 LPIPSLVLCR VSAVRFMADP ETDEVYAKIM LIPLRENSFG VEDDGFDGNV GVENPEKSAS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILAKDVHGEV WKFRHIYRGT 180 PRRHLLTTGW SNFVNHKKLV AGDSIVFLRA DNGDLCVGIR RAKRGLGGGH EFPGWNSVSG 240 TSGSQVGSYS PFLTEGESKL MRKDCNGDPR GRIRADSVIE AASHAASGQP FEVVYYPRTS 300 TPEFCVKASS VRAAMQIQWY PGMRFKMPFE TEDSSRISWF MGTISTAQVV DPIRWPNSPW 360 RLLQVAWDEP DLLHNVKRVS PWLVELVTNI PAINLNPFSP PRKKMRLPQH PDISFLNQIP 420 MPSFSRNSFR SSSPMRCITD NIPGGIQGAR HEPFGLSSSD LRSNKLHSGL FPSGFHQLDR 480 TAPPTRLSGN NFCSDNANNT NISSLLTIGN PTQSLKQSND SKTPHIVLFG QLIFCEQRAS 540 QSCSGDTVGN SSSDGNTEKT AISSDGTGSV LHQNVRENSS DEGFPWCKED QKTDLGLETG 600 HCKVFMESEN VGRTLDLSVL GSYEELYGKL ANMFGIESSE MLSSVLYRDA AGSVKHTGDE 660 PFSEFMKTAR RLTILMDSSS DNLER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-78 | 1 | 385 | 33 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.5551 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017649647.1 | 0.0 | PREDICTED: auxin response factor 18-like isoform X2 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A2P5W9D5 | 0.0 | A0A2P5W9D5_GOSBA; Auxin response factor | ||||
STRING | Gorai.011G238900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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