PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1568
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 974aa    MW: 107832 Da    PI: 7.5494
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1568genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.72.6e-54201363118
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e ++rwl++ e+++iL n++k++l+ ++++rp+ gsl L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK+g+v+vl+cyYah++ n++fqrrcy
  Gh_A10G1568  20 QEaQHRWLRPVEVCEILGNYTKFRLSDKPPSRPSAGSLYLFDRKTIRYFRKDGHDWRKKKDGKTVREAHEKLKIGSVDVLHCYYAHGQFNENFQRRCY 117
                  5559********************************************************************************************** PP

         CG-1 100 wlLeeelekivlvhylevk 118
                  w+L+ ++e+iv+vhy+evk
  Gh_A10G1568 118 WMLDGQFEHIVFVHYREVK 136
                  ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.81615141IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038596.1E-4821134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.8E-5431522IPR013783Immunoglobulin-like fold
CDDcd001022.66E-4432522No hitNo description
SuperFamilySSF812961.68E-15433521IPR014756Immunoglobulin E-set
SuperFamilySSF484031.07E-15613711IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.4E-16613714IPR020683Ankyrin repeat-containing domain
CDDcd002044.64E-14614708No hitNo description
PROSITE profilePS5029717.661616720IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0083649678IPR002110Ankyrin repeat
PROSITE profilePS5008810.472649681IPR002110Ankyrin repeat
SMARTSM00248250688717IPR002110Ankyrin repeat
SMARTSM00015260767789IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525406.11E-10783872IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.88821843IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.389822851IPR000048IQ motif, EF-hand binding site
PfamPF006120.0024824842IPR000048IQ motif, EF-hand binding site
SMARTSM000154.1E-4844866IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.798845869IPR000048IQ motif, EF-hand binding site
PfamPF006127.0E-5848866IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    Send to blast
MAQGRRYLPS QQLDLQQILQ EAQHRWLRPV EVCEILGNYT KFRLSDKPPS RPSAGSLYLF  60
DRKTIRYFRK DGHDWRKKKD GKTVREAHEK LKIGSVDVLH CYYAHGQFNE NFQRRCYWML  120
DGQFEHIVFV HYREVKEGYR SGISCLLVDP GSQSESLQTG LAPSLTHENS PAATIQVSPT  180
STSKIGWNGK TLSSKFEDVD SGDDPSAVAP DQPIYGSKSC TASVEPEVAG FPESGRNPPG  240
SWLGESNFNH NTVSGSSFWP GSHHLATNNI SMLDHKLYVE QPTTSDFITK EAQVRLHDGS  300
DAVTCGDKLI NDGDVQAVGE YPEKLTQELQ SQNYSGPEKV VSTSMQNEKE PKGIGKNYDE  360
PGELKKLDSF GRWMDKEIGG DCDDSLMASD SANYWSTLNT ETDDKEVSSL SCHMQLDIDS  420
LGPSLSQEQL FSIVDFSPDW AYSGVGTKVL LVGNFLKNKE LPIAAKWGCM FGEIEVSAEV  480
LTNNVIRCQV PSHVPGRVPF YITCSNSNRL ACSEVREFEY REKPSGFSFI TAVKCTAQEE  540
MHLQVCLAKL LHTGSGRKWL DCSVEECDKC KLKSSICSMG VASANDCIQS KEGLILNLLK  600
QKLSQWLIHK VHEDGKGQGV IHLAASLGYE WAMNPIVAAG ISPNFRDAKG RTALHWASYF  660
GREAAVIALI KLGASPGAVD DPTPSFPGGR TAADLASSRG HKGIAGYLAE ADLTTHLSSL  720
TVNQNVVGND ATTPAQEAIE TSSEVAPCNG TLDDNCSLKG SLAAVRKSVH AAALIQAAFR  780
ARSAHLRQLT KGNDDMFEIS LELGILGSLN RLQKTSHFGD YLHTAASKIQ QKYRGWKVRK  840
EFLEIRNRIV KIQAHVRGHQ VRKQYKKLVW SVGLVEKIIL RWRRKGAGLR GFRVQTATDK  900
TVAGIEIEDE YEFLQVGQQQ KVDGIEKALA RVKSMARDQE ACEQYMRLTT KFGESKNSDR  960
GSSDSSNAIV KSKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.220920.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098916450.0
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677274.10.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
TrEMBLA0A1U8IN930.0A0A1U8IN93_GOSHI; calmodulin-binding transcription activator 3-like isoform X1
STRINGGorai.011G204700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16526911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein