PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G1549

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 349aa MW: 38178.2 Da PI: 6.1055

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G1549	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.6	6.3e-34	185	243	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCtsagC vkk+vers++dp++v++tYeg+H+h+ Gh_A10G1549 185 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSAGCGVKKRVERSSDDPTIVVTTYEGQHKHP 243 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	7.2E-97	6	347	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	2.5E-35	170	245	IPR003657	WRKY domain
SuperFamily	SSF118290	1.06E-29	177	245	IPR003657	WRKY domain
PROSITE profile	PS50811	33.189	180	245	IPR003657	WRKY domain
SMART	SM00774	9.7E-39	185	244	IPR003657	WRKY domain
Pfam	PF03106	1.8E-27	186	243	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MANLIFSDEN PSAAAAAAAA EATSSGGSIF DMATGAGACD GDTKWGSSLG FMDLLGIHQD 60 FIAPSLFDSF QPPPILPPPP PSTSSEPLLH QQLDAKQLQA LPSPASTLPE SSEVLNNPAT 120 PNSSSFSSSS NEAANDHEPT KAEDDEEEEQ HQDKTKKQLK PKKKNQKRQR EPRFAFMTKS 180 EVDHLDDGYR WRKYGQKAVK NSPFPRSYYR CTSAGCGVKK RVERSSDDPT IVVTTYEGQH 240 KHPYPITPRG SIGINMDPSS SFGPSFVVPQ PQYLHQQQQL QPYIYNSSPS LNITSITTSG 300 SSFNASIPDF LQDRRFNTSP TSSSASLPRD NGLLQDIVPT QMRKEAKEQ

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MANLIFSDEN PSAAAAAAAA EATSSGGSIF DMATGAGACD GDTKWGSSLG FMDLLGIHQD  60
FIAPSLFDSF QPPPILPPPP PSTSSEPLLH QQLDAKQLQA LPSPASTLPE SSEVLNNPAT  120
PNSSSFSSSS NEAANDHEPT KAEDDEEEEQ HQDKTKKQLK PKKKNQKRQR EPRFAFMTKS  180
EVDHLDDGYR WRKYGQKAVK NSPFPRSYYR CTSAGCGVKK RVERSSDDPT IVVTTYEGQH  240
KHPYPITPRG SIGINMDPSS SFGPSFVVPQ PQYLHQQQQL QPYIYNSSPS LNITSITTSG  300
SSFNASIPDF LQDRRFNTSP TSSSASLPRD NGLLQDIVPT QMRKEAKEQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-28	178	245	10	77	Probable WRKY transcription factor 4
2lex_A	8e-28	178	245	10	77	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2995	0.0	ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN609590	0.0	JN609590.1 Gossypium hirsutum WRKY48 mRNA, complete cds.
GenBank	KF669855	0.0	KF669855.1 Gossypium hirsutum WRKY transcription factor 95 (WRKY95) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647359.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	2e-62	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A0B0N9Q9	0.0	A0A0B0N9Q9_GOSAR; Putative WRKY transcription factor 48-like protein
STRING	Gorai.011G201800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	4e-52	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]