PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1437
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 310aa    MW: 34842.7 Da    PI: 6.1721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1437genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-174795355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+ +++g
  Gh_A10G1437 47 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAAISMKG 95
                 56******.**********965...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-3246109IPR001471AP2/ERF domain
PROSITE profilePS5103220.3146103IPR001471AP2/ERF domain
CDDcd000182.82E-2946102No hitNo description
SuperFamilySSF541719.15E-2047103IPR016177DNA-binding domain
PRINTSPR003672.0E-74758IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2747102IPR001471AP2/ERF domain
PfamPF008471.5E-104995IPR001471AP2/ERF domain
PRINTSPR003672.0E-76985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDKGYGYEPL PQAHHLASTF MMLQRNKSSY QSGERRGRRK AAEPGRFLGV RRRPWGRYAA  60
EIRDPTTKER HWLGTFDTAH EAALAYDRAA ISMKGTQART NFVYFDHNNN TAFHSIMSPS  120
DVQSAVLPTP YHFLDLTTPQ SRPKQASNHS FEAPQPDISH SETKTLTQPN NTKSPIPLSS  180
ADNGFFFTDN DDNSGYLACI VPYNCLKPPS NKSIDNQSQA LPKSNDIIEF PGFNELDQQG  240
NFMRDQQPWE INSFELEAIF NHPPLMVGNE CTGAFYPSSY DMIPQPISSV DTCCFPLPSF  300
GDVVDLGYSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2037102571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648685.10.0PREDICTED: ethylene-responsive transcription factor ERF086-like
TrEMBLA0A2P5W1W10.0A0A2P5W1W1_GOSBA; Uncharacterized protein
STRINGGorai.011G188200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54872650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.15e-51ERF family protein