PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1402
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 731aa    MW: 82019.6 Da    PI: 6.6393
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1402genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.31.1e-21186286198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++ +++a+++       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   +  ++e
  Gh_A10G1402 186 FCKTLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELIATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGANGE 279
                  99****************************975444444..8************************************************..348999 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+v+r
  Gh_A10G1402 280 LRVGVRR 286
                  9***997 PP
2Auxin_resp113.52e-37312394183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+st+s+F+++Y+Pr+s seF+v+v+k+++a ++k+svGmRfkm+fe+e+ +err+sGt+vgv+d +++ W +S+WrsLk
  Gh_A10G1402 312 ASHALSTRSMFSIFYKPRTSLSEFIVSVNKFLEAQSHKLSVGMRFKMRFEGEEIPERRFSGTIVGVEDNKSSAWADSEWRSLK 394
                  789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-42175315IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-40183301IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-20184286No hitNo description
PROSITE profilePS5086311.039186288IPR003340B3 DNA binding domain
PfamPF023621.9E-19186286IPR003340B3 DNA binding domain
SMARTSM010197.9E-21186288IPR003340B3 DNA binding domain
PfamPF065072.2E-34312394IPR010525Auxin response factor
PfamPF023096.4E-12602698IPR033389AUX/IAA domain
PROSITE profilePS5174526.956608701IPR000270PB1 domain
SuperFamilySSF542772.09E-11610685No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
KREEEIRAKN KRKNLERECL CVRKRTEKEA AIAKRALVGF DRTLTQTNLF TLLNREHSKG  60
VSMAFPASEI PSAEQQADDP LYRELWHACA GPLVTLPRVG ERVYYFPQGH MEQLEASMHQ  120
GLEHQMPSFD LPSKILCKVA SVQRKAEPDT DEVYAQITLV PEVDQSEVMS PDDPLQEPER  180
CIVHSFCKTL TASDTSTHGG FSVLRRHADD CLPPLDMTQQ PPWQELIATD LHGNEWHFRH  240
IFRGQPRRHL LTTGWSVFVS SKKLVAGDAF IFLRGANGEL RVGVRRLMRQ QANMPSSVIS  300
SHSMHLGVLA TASHALSTRS MFSIFYKPRT SLSEFIVSVN KFLEAQSHKL SVGMRFKMRF  360
EGEEIPERRF SGTIVGVEDN KSSAWADSEW RSLKVQWDEP SSIIRPDRVS PWELEPLVAT  420
SNSSISQPAQ RNKRARPPVL PSPSSDLSSL GIWKSPVESP FSYCDAQRGH PSPKLSSAAK  480
PNSVGFNRNS SLAAVSSSSM YWPNRVENVT ESVAPVVNKE SSERKQGTGN GCRLFGIQLL  540
DKINMEENSP LATISGTGVD DQPLHSLDAN SDQQSDPSNL NQSDLPSISC EPEKCLRSPQ  600
ESQSKQIRSC TKVHMQGMAV GRAVDLTRFD CYEDLLKKLE YMFDIKGQLC GSTKNWQVVY  660
TDDEDDMMMV GDDPWNEFCS MVRKIFIYTS EEVRKLSPKI KLPVNDDDDD SKATKAGVDT  720
VINPEDRSSG T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.07942317361Auxin response factor 1
4ldw_A0.07942317361Auxin response factor 1
4ldw_B0.07942317361Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.125270.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. {ECO:0000269|PubMed:16176952}.
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1539830.0DQ153983.1 Gossypium barbadense auxin response factor 1 (ARF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677363.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016677364.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016677365.10.0PREDICTED: auxin response factor 1-like
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A1U8IH000.0A0A1U8IH00_GOSHI; Auxin response factor
STRINGGorai.011G091100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88252227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]