PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1400
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 305aa    MW: 33260.5 Da    PI: 8.2691
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1400genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.51.4e-3279135259
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  ++vrY+eClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e 
  Gh_A10G1400  79 KAVRYRECLKNHAAAMGGNAIDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEIEG 135
                  689**************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2481139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.2E-2981133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-3182133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.78783132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.1E-31215286IPR009057Homeodomain-like
SuperFamilySSF466891.11E-19217285IPR009057Homeodomain-like
TIGRFAMsTIGR015652.4E-27224280IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MELSNQEGEI PIPLNSTYGG GHGHGHGHGH GHGHGHGHMI HHDPAAPHNH IIPSSAPPIL  60
SNGPSSLSTN LDDHVPYKKA VRYRECLKNH AAAMGGNAID GCGEFMPSGE EGTIEALNCS  120
ACNCHRNFHR KEIEGEPSSF DCYPLHSPHL SSRVGRKLIL GHHKSILPPE ALGYPTGTLI  180
HSRAAPTPHQ MIMSYNMGSL PSESDEQPED GGGVAGSRPL QLMKKRFRTK FTQEQKEKML  240
NFAEKVGWKI QKQEEAVVQQ FCQEIGVKRR VLKVWMHNNK HNLARKNPCN STANATAAAP  300
TTTAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-242252821875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.131740.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677367.10.0PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ9M9S04e-78ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A1U8IGS80.0A0A1U8IGS8_GOSHI; zinc-finger homeodomain protein 4-like
STRINGGorai.011G090900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.13e-78homeobox protein 21