PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1335
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 914aa    MW: 100078 Da    PI: 6.6136
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1335genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18321420198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++lv+
  Gh_A10G1335 321 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCMQSMQLQAGDTVTFSRMD-PEGKLVM 416
                  99**************************555567778***************9989999999***9.********************876.7777787 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Gh_A10G1335 417 GFRK 420
                  7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.1E-4342IPR013088Zinc finger, NHR/GATA-type
Gene3DG3DSA:2.40.330.102.1E-30313430IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-20318421IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-22319420No hitNo description
PfamPF023624.2E-16321420IPR003340B3 DNA binding domain
SMARTSM010197.0E-20321421IPR003340B3 DNA binding domain
PROSITE profilePS5086311.011321422IPR003340B3 DNA binding domain
PROSITE profilePS5105014.559586636IPR011124Zinc finger, CW-type
PfamPF074965.1E-13591633IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MASKSCMNGL CGATTSIEWR KGWALRSGDF ANLCDKCGSA YEQSIFCDIF HSKDAGWREC  60
SSCGKRLHCG CIVSRCLLEL LDSGGGIICI SCAKKSGLNP MIEDEKPNGF GIVKTNAGQL  120
PSISADNQLI SISNENLKLM QLSNNAESIG LRQLLQLHND DSSRSFVQMK QEEVLPPAID  180
IGSTCLSNTN QASNGSVQAV KPAICKANIS ETLLQTNLSI SLGSSLGNQN VFPGSVVDEK  240
GKMSSVLQQA SKSLHLLPKP PKPVLAGLEV NAGMVPQIRV ARPPVEGRGR NQLLPRYWPR  300
ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI  360
QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CMQSMQLQAG DTVTFSRMDP EGKLVMGFRK  420
ATNNAAVQET LPSAIPNGTL SSESLFSGVF ENLPIISGYS GLLQSLKGST DPHLNALSKH  480
LSSTGGDISW NKSGKHEDRI REGLLLPSML TPERKRTRNI GSKSKRLLID SQDALELKLT  540
WEEAQDLLRP PPSIKPSVVT IEDHDFEEYD EPPVFGKRSI FAVRSTGGQE QWAQCDSCSK  600
WRRLPVDVLL PPKWTCADNN WDQSRSSCSA PEELTPRELE NLLRLNRDFK KRRIAAFTRP  660
TQEHESSSGL DALANAATLG DNADNSGTTS VATTTKHPRH RPGCSCIVCI QPPSGKGKHK  720
PTCTCVVCMT VKRRFKTLTM RKKKRQSERE AEIAQRNQQA WGPSEEAEVD SSSKHVSSSH  780
LNPFENEARS ANELESKSQS STKLVEANKG QIDLNCDPDR EDDSQLGPNR TSMTSLVRVA  840
SLPLETYLKE NGLTSLVYEQ QGNSASNAPP QSMSGTVEGE TQENSCFPSA TEEPESKDEE  900
NGETGSDRVD DNND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-682994282131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1731742KRRFKTLTMRKK
2731744KRRFKTLTMRKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677584.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
RefseqXP_016677586.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A1U8IP380.0A0A1U8IP38_GOSHI; B3 domain-containing transcription repressor VAL2-like isoform X1
STRINGGorai.011G127500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72032639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]