PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1280
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 150aa    MW: 16844.3 Da    PI: 9.4207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1280genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.7e-0633721054
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 + R d++ +++ +L++l+ +      +K + a++L +A+eYI+ L
  Gh_A10G1280 33 KDRKDKVGERIVTLQQLVSPY-----GKTDTASVLLQAMEYIQFL 72
                 678899999*********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.2872372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-92383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0042978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-122990IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.33E-53377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MMENKRSPCS VDHSSFTPLA SKRQKSDLLI STKDRKDKVG ERIVTLQQLV SPYGKTDTAS  60
VLLQAMEYIQ FLHEQVKVLS APYLQTSPTN NMQVSIKPAQ EQEHYSLRSQ GLCLVPLSYT  120
MGVVHSNGAD IWAPIKTASP KFDKPFTQFN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.135730.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677550.11e-109PREDICTED: transcription factor bHLH113-like isoform X1
SwissprotQ7XJU22e-58BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A1U8IHH61e-108A0A1U8IHH6_GOSHI; transcription factor bHLH113-like isoform X1
STRINGGorai.011G135700.11e-104(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.57e-61bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]