PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G1257

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 951aa MW: 104211 Da PI: 5.0117

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G1257	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	8e-29	588	639	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+++l++l+ yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Gh_A10G1257 588 AEKNVTLSVLQPYFSGSLKDAAKSLGVCPTTLKRICRQLGIPRWPSRKINKV 639 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	571	659	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-26	591	639	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-23	848	936	No hit	No description
SMART	SM00666	6.0E-22	852	934	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.0E-25	852	934	No hit	No description
PROSITE profile	PS51745	20.863	852	934	IPR000270	PB1 domain
CDD	cd06407	5.90E-32	853	933	No hit	No description
Pfam	PF00564	3.5E-17	853	933	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 951 aa Download sequence Send to blast
MKKMESPFSC KEKGNNSSVP PRAQMEGFGG TGSSKNSLSE DPFNFSELMN FDSYAGWFNS 60 PSATDQMFAS FSLSSFPSLP YASFDLLPIT GQSSGTFVEA ADALNGMDSS YNSGDKTVFQ 120 QTGTHIGNPV VPSDAELGSS NLPNSLVSGP TGPSLDEKML RALSLLKESS GGGILAQVWV 180 PIRHGDQYML TTSEQPYLLD QMLSGYREVS RTYIFSAEKK PGSFPGLPGR VFISRVPEWT 240 SDVIHYSKGE YLRFTHAVNY KVRGSIALPI FEPPDMSCCA VLELVTMKEK PNFDSEMKTV 300 SLALQAVNLR TIAPRQPLPQ CLSGSKRAAL AEITDVLRAV CHAHRLPLAL TWIPCYYTEE 360 AVDEILKVGG GEGNRRWDGK RVLCVETTAC YVNERGMQDF VHACMEHYLE EGQGIAGKVL 420 RSNHPFFSTD VKTYDISDYP LVHHARKCNL NAAVAIRLRS TYTGDDDYIL ELFLPINLKG 480 GSEQQLLLNN LSGTMQRICR SLRTVSDVEI DGGSKIEVQR GKLSDSPSLS ISRRVSETEL 540 SADSEMNSND TVPLHVSNAK SDGKEADGPR EQAMSGPRRQ IEKKRSTAEK NVTLSVLQPY 600 FSGSLKDAAK SLGVCPTTLK RICRQLGIPR WPSRKINKVN RSLRKIQTVL DSVQGGLKFD 660 PTTGEFIAAG TVMQEVDTQK TLVLSNKNLP IRISEPLDLE KSSAASLESC PDEENSVVKL 720 EEDECSLGGN YSMAARSVLV PSTCEEVKQS GVPCIDCNDD SKSVSLDAGS FQAASLRTAD 780 RTCPENADDE INIRMEADDG NAEHNHQPTY SSMTDSSDGS GSMSHGSSSS SQSFDEAKNF 840 EMKTICVDSS SKITVKATYK DDTVRFKFEP SAGCFELYEE IARRFKLQTG TFQLKYLDDE 900 EEWVMLVSDS DLQECLEVME YVGTHNVKFQ VRDVPCAIGS SGGSNCFLGG S

Sequence ? help Back to Top

Protein Sequence Length: 951 aa Download sequence Send to blast

MKKMESPFSC KEKGNNSSVP PRAQMEGFGG TGSSKNSLSE DPFNFSELMN FDSYAGWFNS  60
PSATDQMFAS FSLSSFPSLP YASFDLLPIT GQSSGTFVEA ADALNGMDSS YNSGDKTVFQ  120
QTGTHIGNPV VPSDAELGSS NLPNSLVSGP TGPSLDEKML RALSLLKESS GGGILAQVWV  180
PIRHGDQYML TTSEQPYLLD QMLSGYREVS RTYIFSAEKK PGSFPGLPGR VFISRVPEWT  240
SDVIHYSKGE YLRFTHAVNY KVRGSIALPI FEPPDMSCCA VLELVTMKEK PNFDSEMKTV  300
SLALQAVNLR TIAPRQPLPQ CLSGSKRAAL AEITDVLRAV CHAHRLPLAL TWIPCYYTEE  360
AVDEILKVGG GEGNRRWDGK RVLCVETTAC YVNERGMQDF VHACMEHYLE EGQGIAGKVL  420
RSNHPFFSTD VKTYDISDYP LVHHARKCNL NAAVAIRLRS TYTGDDDYIL ELFLPINLKG  480
GSEQQLLLNN LSGTMQRICR SLRTVSDVEI DGGSKIEVQR GKLSDSPSLS ISRRVSETEL  540
SADSEMNSND TVPLHVSNAK SDGKEADGPR EQAMSGPRRQ IEKKRSTAEK NVTLSVLQPY  600
FSGSLKDAAK SLGVCPTTLK RICRQLGIPR WPSRKINKVN RSLRKIQTVL DSVQGGLKFD  660
PTTGEFIAAG TVMQEVDTQK TLVLSNKNLP IRISEPLDLE KSSAASLESC PDEENSVVKL  720
EEDECSLGGN YSMAARSVLV PSTCEEVKQS GVPCIDCNDD SKSVSLDAGS FQAASLRTAD  780
RTCPENADDE INIRMEADDG NAEHNHQPTY SSMTDSSDGS GSMSHGSSSS SQSFDEAKNF  840
EMKTICVDSS SKITVKATYK DDTVRFKFEP SAGCFELYEE IARRFKLQTG TFQLKYLDDE  900
EEWVMLVSDS DLQECLEVME YVGTHNVKFQ VRDVPCAIGS SGGSNCFLGG S

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20574	0.0	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016677697.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1U8IHS9	0.0	A0A1U8IHS9_GOSHI; protein NLP9-like
STRING	Gorai.011G138700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]