PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G1028

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HSF

Protein Properties

Length: 357aa MW: 41534.8 Da PI: 6.2613

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G1028	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.4	7.4e-36	42	134	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+i++d++++++isw + +nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv++++ weF++++F +gk++ll++i+ Gh_A10G1028 42 FLTKTYDIIDDSSTNNIISWGRANNSFIVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFANENFLRGKRHLLKNIR 129 9******************999**************************************99.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Gh_A10G1028 130 RRKTH 134 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	6.94E-35	38	131	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	6.2E-38	38	131	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.1E-58	38	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.4E-31	42	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	42	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	80	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	81	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	93	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MNPYGRVKEE FPGASSSYPA GMPSMVTAQQ MKGLHDAGPP PFLTKTYDII DDSSTNNIIS 60 WGRANNSFIV WDPQAFSMTL LPRFFKHNNF SSFVRQLNTY GFRKVDTDRW EFANENFLRG 120 KRHLLKNIRR RKTHQPQASQ YALDHCVEVG RFGLDGEIDR LRRDKQVLMV ELVKLRQQQQ 180 NTRTCLLAVE KRLRKTEMKQ QQMMSFLAKA MQNPSFVQQL IQHNDRSKEL EEAITKKRQR 240 RIDQRSMDVE TSELLGAKTE PKCYDVAEFE VTELDKLFMN LQRLTGSQNN IELEHVEESK 300 DHGSKGKSLD EGFWDDLMDG DTHDIDQEIS VLDVEEEDEQ YLDVLVEQLR YLGSSSK

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MNPYGRVKEE FPGASSSYPA GMPSMVTAQQ MKGLHDAGPP PFLTKTYDII DDSSTNNIIS  60
WGRANNSFIV WDPQAFSMTL LPRFFKHNNF SSFVRQLNTY GFRKVDTDRW EFANENFLRG  120
KRHLLKNIRR RKTHQPQASQ YALDHCVEVG RFGLDGEIDR LRRDKQVLMV ELVKLRQQQQ  180
NTRTCLLAVE KRLRKTEMKQ QQMMSFLAKA MQNPSFVQQL IQHNDRSKEL EEAITKKRQR  240
RIDQRSMDVE TSELLGAKTE PKCYDVAEFE VTELDKLFMN LQRLTGSQNN IELEHVEESK  300
DHGSKGKSLD EGFWDDLMDG DTHDIDQEIS VLDVEEEDEQ YLDVLVEQLR YLGSSSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-24	33	133	17	131	Heat shock factor protein 1
5d5v_B	3e-24	33	133	17	131	Heat shock factor protein 1
5d5v_D	3e-24	33	133	17	131	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00371	DAP	Transfer from AT3G22830	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR067417	0.0	KR067417.1 Gossypium hirsutum HSF36 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016677876.1	0.0	PREDICTED: heat stress transcription factor A-6b-like
Refseq	XP_016677877.1	0.0	PREDICTED: heat stress transcription factor A-6b-like
Swissprot	Q9LUH8	1e-129	HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBL	A0A1U8IIG6	0.0	A0A1U8IIG6_GOSHI; heat stress transcription factor A-6b-like
STRING	Gorai.011G168400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1256	28	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-123	heat shock transcription factor A6B

Publications ? help Back to Top
Wang J,Sun N,Deng T,Zhang L,Zuo K Genome-wide cloning, identification, classification and functional analysis of cotton heat shock transcription factors in cotton (Gossypium hirsutum). BMC Genomics, 2014. 15: p. 961 [PMID:25378022]