PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G1013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 212aa MW: 24237.4 Da PI: 7.5037 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.2e-09 | 61 | 108 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f L + l + + + +K++iL A++ + +L Gh_A10G1013 61 TKACREKLRREKLNERFLDLSSTLEPG---RPARTDKSAILDDAIRVLTQL 108 6789**********************8...789*************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.66E-12 | 49 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.69E-6 | 55 | 113 | No hit | No description |
PROSITE profile | PS50888 | 12.843 | 57 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-6 | 61 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-10 | 63 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-8 | 63 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MDLIEDWDFL DYSFIDENTS PDILLPNYSG REIVVHQEKG FVDRDCSRKR GRSGSCSRPG 60 TKACREKLRR EKLNERFLDL SSTLEPGRPA RTDKSAILDD AIRVLTQLRT DAQELKETNE 120 KLLEEIKSLK AEKNEIRDEK LVLKANKERI EQQSKTLNVS PARYLPAHPA GYHAATNKMA 180 VFPGYGLVPM WQYLPPSSRD TSQDHELRPP AA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016677847.1 | 1e-156 | PREDICTED: transcription factor bHLH104-like | ||||
Swissprot | Q8L467 | 2e-78 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A1U8II88 | 1e-155 | A0A1U8II88_GOSHI; transcription factor bHLH104-like | ||||
STRING | Gorai.011G172500.1 | 1e-145 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4026 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 3e-50 | bHLH family protein |