PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0849
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 517aa    MW: 58387.5 Da    PI: 6.0298
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0849genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.32e-911605163374
         GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  e L+++A++++++dl+laq +L rl+++ +sp+g+p+qR+ +yf+eAL++  ++  s      p++ +s+++ ++++ a+k fs + Pi+ f h+t+N
  Gh_A10G0849 160 EELIRAANCFDTHDLQLAQVILDRLHQRlRSPSGKPLQRASFYFKEALQSLFTG--S--TWPNPVRLSSWSEIVQTIEAYKSFSGINPIPMFNHFTTN 253
                  689************************99************************9..2..2234777788888************************** PP

         GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  qa+lea++g+   +HiiDfdi+ G+Q+++L++++a+R+ ++   +RiT+v+++e     e++ ++++L++fA++l+++f++++++  ++e++++++++
  Gh_A10G0849 254 QALLEALDGSaPLIHIIDFDIGFGGQYASLMREMAERNdHSRKFIRITAVVPEE--YGFETRLIEDNLNQFAQALRLRFQIEFVLLPTFETMSFKAFK 349
                  **********7889************************556669********66..99999**********************9999*********** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvErell 290
                  + +gE++a+ l+ +++r l   +++    +++++ ++++sP vvv+v++e  ++  +++sF + f+++le+y+++f+sl+a      e+ +k+E  ll
  Gh_A10G0849 350 FINGEKTAILLSPSIFRCL--GLQV----TAFVSDLRRISPSVVVFVDSEvwMESgTTTSFRKNFVNCLEFYAMMFESLDAA---GGEWVRKIETLLL 438
                  ******************9..3333....56*******************665666778********************998...689********** PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +++i ++v ++ +        +  Wre + eaG+++v+ls+ a  qa++ll+kv+++g++v +++++lvl+W++ +L ++S+Wr
  Gh_A10G0849 439 RPRIFSAVEAAART------AAPAWREVFCEAGMRAVRLSQLADFQAESLLQKVQVRGFHVAKRQAELVLCWHKTALSATSVWR 516
                  ********998887......7899***********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.616132496IPR005202Transcription factor GRAS
PfamPF035146.8E-89160516IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MRVPVCSPQA NHYPIPKPDI NNNNITITAG NITFLNSSVP ASSCEPTLEL DLRRSPSSAV  60
TENPVLNPAD NSNCFSVSGP HQQQAGLEWD EHVLRNMDWD AILKDFGLDD ESVPATKTIP  120
PQVINPRLDN HIQNVPELTS CELTHHPLHS DFNLYESYSE ELIRAANCFD THDLQLAQVI  180
LDRLHQRLRS PSGKPLQRAS FYFKEALQSL FTGSTWPNPV RLSSWSEIVQ TIEAYKSFSG  240
INPIPMFNHF TTNQALLEAL DGSAPLIHII DFDIGFGGQY ASLMREMAER NDHSRKFIRI  300
TAVVPEEYGF ETRLIEDNLN QFAQALRLRF QIEFVLLPTF ETMSFKAFKF INGEKTAILL  360
SPSIFRCLGL QVTAFVSDLR RISPSVVVFV DSEVWMESGT TTSFRKNFVN CLEFYAMMFE  420
SLDAAGGEWV RKIETLLLRP RIFSAVEAAA RTAAPAWREV FCEAGMRAVR LSQLADFQAE  480
SLLQKVQVRG FHVAKRQAEL VLCWHKTALS ATSVWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2219251636375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016678505.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-162SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1U8IK680.0A0A1U8IK68_GOSHI; scarecrow-like protein 15
STRINGGorai.011G102400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-150GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]