PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0837
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 316aa    MW: 33893.5 Da    PI: 8.8385
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0837genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.95.1e-3958117261
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                  ++++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++
  Gh_A10G0837  58 HHQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKST 117
                  57899*****************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-2657115IPR003851Zinc finger, Dof-type
PfamPF027019.6E-3360116IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.51662116IPR003851Zinc finger, Dof-type
PROSITE patternPS01361064100IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MIQELLGGSS CLNFGGERKI SINGSILEGT PTSSPSPSSS SSSATTSSTS NSSNPENHHQ  60
NLRCPRCDSS NTKFCYYNNY NLTQPRHFCK TCRRYWTKGG ALRNVPIGGG CRKNKSTTGV  120
STSLGKSTSP KMKTVVSEIG RSGFDHELQS TPILWTSAAQ TSHLLSNLTS MRATLNPNPN  180
TLSNPVSIKE EVSLLGSQVM NEPVVAAAAL NARTLGLDLV NPFWKNNQHH AQQQQNNNGF  240
LVGEVQNTGI QELYQRLKSS SSYYSDTSAV ILSNVASSSS TSILESAPVA GGELGYWNPA  300
FSSSWSDLPT TNGAYP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.192440.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9640022e-32JX964002.1 Gossypium hirsutum clone NBRI_TRANS-271 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648193.10.0PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBLA0A1U8KCH20.0A0A1U8KCH2_GOSHI; dof zinc finger protein DOF5.1-like
STRINGGorai.011G104200.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16000915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.17e-35OBF binding protein 4