PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0792
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 491aa    MW: 54540.1 Da    PI: 6.7581
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0792genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.1e-15207266155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Gh_A10G0792 207 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 266
                  57*******************666664478446*************************98 PP
2AP249.98.1e-16309360155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Gh_A10G0792 309 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 360
                  57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.59E-23207276No hitNo description
SuperFamilySSF541718.5E-18207276IPR016177DNA-binding domain
PfamPF008476.5E-12207266IPR001471AP2/ERF domain
SMARTSM003804.8E-30208280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-16208275IPR001471AP2/ERF domain
PROSITE profilePS5103219.44208274IPR001471AP2/ERF domain
PRINTSPR003672.1E-6209220IPR001471AP2/ERF domain
CDDcd000188.81E-12309370No hitNo description
SuperFamilySSF541717.19E-18309370IPR016177DNA-binding domain
PfamPF008474.2E-10309360IPR001471AP2/ERF domain
SMARTSM003807.7E-32310374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18310369IPR001471AP2/ERF domain
PROSITE profilePS5103219.151310368IPR001471AP2/ERF domain
PRINTSPR003672.1E-6350370IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MASASNWLWF SLSPMEMLRS SSEPQFVSYE GSPAASSHHL IDNFYANGWT NPKHQAFVQG  60
EKNQSEEAQT EASMADESPI FTSFHYQAPK LEDFLGDSSS MVRYSDSQAE TQEDSSLTQI  120
YDPSVSTYFD HHQDLNQITG FQTFSTNSGS EVDESSSRGR TQLTGVELPG HSIESSGNNT  180
TNNNKAIVSV DSDNSKKIAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR  240
QVYLGGYDKE EKAARAYDLA ALKYWGPTAT TNFPISDYSK ELEEMKHATK QEFIASLRRK  300
SSGFSRGASI YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG  360
VNAVTNFEMS RYDVKAIAQS SLPIGGAAKR LKLSLESEPK PIVNQKQQPP PPRCSSNSNL  420
ISFAPMKQPV STIPCGIPFD AAAATAAFYQ QNLYQHLQTA NTSVTEPPGS SSTTVMPQPA  480
AEFFLWPHPS Y
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.12500.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5869991e-61JX586999.1 Gossypium hirsutum clone NBRI_GE20975 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612814.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU21e-177AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2P5XNU00.0A0A2P5XNU0_GOSBA; Uncharacterized protein
STRINGGorai.011G109500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-176AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]