PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0730
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 328aa    MW: 36020.4 Da    PI: 6.5944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0730genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000422082461255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Gh_A10G0730 208 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 246
                  6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.534196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-10206258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.92E-6206250No hitNo description
Gene3DG3DSA:4.10.280.101.8E-7210253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MMAGNPSWWS MHLHPPSQHP STLLVTPSPS LFPQYVVEYS ATSLPDNQEL PQSCSQLLFG  60
GFSGEEERLC PSNFQPKKLE NWENQILNPS LRVPVVEVIK QEVTQQHSNL YGHHHASEEF  120
QAPRLPVPPA AWSQIMGTAV LSPSPRSCIT TSSSNMLDFT YNKATDGSIS NIQPPVDHSS  180
ECNSKGSGGV YKKARVQTSS SQPPLKVRKE KLGDRITALH QLVSPFGKTD TASVLLEAIG  240
YIRFLQSQIE ALSSPYLGTA SPNMRNQQSV QGERNCAFPE DEGQEKQEPK PKDLRSRGLC  300
LVPVSCTQQV GSENGADYWS PAFGAAFN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.134451e-144boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016678026.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D12e-68BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A1U8IIV00.0A0A1U8IIV0_GOSHI; transcription factor bHLH68-like
STRINGGorai.011G073400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.19e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]