PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G0711

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 419aa MW: 48041.9 Da PI: 4.0851

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G0711	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.3	7.2e-17	185	269	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+l+L++a + + +r++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk+k++ + t +++s+++yf++++ Gh_A10G0711 185 WTEHETLVLLDAWGDCFLQCGRKSLRTEEWQEVAEKVSEIsKIERTETQCRNRLDTLKKKYKKEKAMLTE-TGGTTSKWVYFKKVD 269 ***********************************775278**********************9.689999****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.9E-21	184	270	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-4	185	250	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.191	185	242	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MDDIEDDARY PPNPYGVSHQ QGYGSSNPQK LPLRNIPSSR PIRNQYVDDD EDGEDEVEDL 60 GEEEETLNRS NGVRYVGEGM DDEDEDEDED EDEDEDEDED EDDDDEEEEE EEDDLLDDDE 120 EEDDYNEGGD DRKNVVANLG RHPKKRKLKS LVSSYEFAPR VPTPAVAAPS VLKSSYGGRN 180 SLTDWTEHET LVLLDAWGDC FLQCGRKSLR TEEWQEVAEK VSEISKIERT ETQCRNRLDT 240 LKKKYKKEKA MLTETGGTTS KWVYFKKVDM LMSTPPQQGR LSCGFDSGEY VFMNPRVYLN 300 RANGLDEMRD SPANSEFADS EEDVSDGLPP KKRRFGRQSG EDSSVKLLAD SIQKFSDIYE 360 KIENSKRQQM LELEKMRMDF HRELEMQKRQ IMERAQAEIA ELQHGENEAN DASGENASG

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MDDIEDDARY PPNPYGVSHQ QGYGSSNPQK LPLRNIPSSR PIRNQYVDDD EDGEDEVEDL  60
GEEEETLNRS NGVRYVGEGM DDEDEDEDED EDEDEDEDED EDDDDEEEEE EEDDLLDDDE  120
EEDDYNEGGD DRKNVVANLG RHPKKRKLKS LVSSYEFAPR VPTPAVAAPS VLKSSYGGRN  180
SLTDWTEHET LVLLDAWGDC FLQCGRKSLR TEEWQEVAEK VSEISKIERT ETQCRNRLDT  240
LKKKYKKEKA MLTETGGTTS KWVYFKKVDM LMSTPPQQGR LSCGFDSGEY VFMNPRVYLN  300
RANGLDEMRD SPANSEFADS EEDVSDGLPP KKRRFGRQSG EDSSVKLLAD SIQKFSDIYE  360
KIENSKRQQM LELEKMRMDF HRELEMQKRQ IMERAQAEIA ELQHGENEAN DASGENASG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.407	1e-179	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016678115.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A1U8IJ26	0.0	A0A1U8IJ26_GOSHI; trihelix transcription factor ASIL1-like
STRING	Gorai.011G076900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15605	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-67	Trihelix family protein