PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G0607 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 421aa MW: 47959.6 Da PI: 7.3916 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160 | 9.2e-50 | 46 | 171 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + ++++ Gh_A10G0607 46 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRGENSRS 142 79***************************.89***************8778899******************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy+g+apkg +t+W+m+eyrl Gh_A10G0607 143 IGLKKTLVFYSGKAPKGIRTSWIMNEYRL 171 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.354 | 45 | 194 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-56 | 45 | 194 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-25 | 47 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MAIPPAAIMS NDPNDNTNIN VVDDRNNNNM SSSSNSKDEH EHDMVMPGFR FHPTEEELVE 60 FYLRRKVEGK RFNVELITFL DLYRYDPWEL PALAAIGEKE WFFYVPRDRK YRNGDRPNRV 120 TTSGYWKATG ADRMIRGENS RSIGLKKTLV FYSGKAPKGI RTSWIMNEYR LPHHETERYQ 180 KVHAEISLCR VYKRPGVEDH PSLPRCLPTR RSAESSRGQQ SEKKYPQEAA QQAMERFQAF 240 GGGQPQQMEI EKLTETDGSS STSTSDVTTA LGLSKQNLYR PMPPISTTPG LPSGMEGEGM 300 FLNQSKQGCC SLLPNSTTLF PVGSSSVPSN VVDDLHRLVS YQQVALNQQQ YYNTNHPHPH 360 QQQHQPQSEF STLPPQSQAQ PQQLSLNVLP SALPSPTAFS DRLWEWNPIP EPNREYNNPF 420 K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-53 | 47 | 194 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-53 | 47 | 194 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-53 | 47 | 194 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-53 | 47 | 194 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-53 | 47 | 194 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-53 | 47 | 194 | 19 | 165 | NAC domain-containing protein 19 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847195 | 0.0 | KC847195.1 Gossypium hirsutum NAC domain protein NAC18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016678255.1 | 0.0 | PREDICTED: NAC domain-containing protein 72-like | ||||
Refseq | XP_017644131.1 | 0.0 | PREDICTED: NAC domain-containing protein 35-like | ||||
Swissprot | Q9ZVP8 | 1e-121 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A0D2T4V9 | 0.0 | A0A0D2T4V9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G090000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5436 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-117 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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