PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G0560

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 413aa MW: 45365.2 Da PI: 5.1654

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G0560	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.2e-08	321	361	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L Gh_A10G0560 321 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 361 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.307	312	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-14	317	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-13	318	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-12	320	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-5	321	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.49E-5	334	366	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MDGLRWDGPE IEAKSLPVWN NERNDMEDSY FLIPNSSNSF MYGGKMDDLP EDIFYQIQEL 60 QKSGNLEDAL QQGLFSSPLM SRAYGFSTLN GSVSDFGMPV HSQGINGGGA TTTGSLESLD 120 CLISATNSNT DTSVEDDGIS MIFSDCKNLW NFAASSAVSS GSENNGSNTG RNEHEEIVSQ 180 SSSDRCINNE NLSQTKSSNS SKRKNDQTEL TFGPNCGYFN LLHTDLSAAE GGFKLIPDNP 240 PKAKKIRSEK HSSSSNINFQ QPASSSVSSS IEEPDPEAIA QMKEMIYRAA AFRPVNLGLE 300 VVEKPKRKNV RISTDPQTVA ARQRRERISE RIRVLQKLVP GGSKMDTASM LDEAANYLKF 360 LRSQVKALEN LGNKLDTMNA PPPSNIAFNH SLPMQTHSFP LLNPNDHIHH SQS

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MDGLRWDGPE IEAKSLPVWN NERNDMEDSY FLIPNSSNSF MYGGKMDDLP EDIFYQIQEL  60
QKSGNLEDAL QQGLFSSPLM SRAYGFSTLN GSVSDFGMPV HSQGINGGGA TTTGSLESLD  120
CLISATNSNT DTSVEDDGIS MIFSDCKNLW NFAASSAVSS GSENNGSNTG RNEHEEIVSQ  180
SSSDRCINNE NLSQTKSSNS SKRKNDQTEL TFGPNCGYFN LLHTDLSAAE GGFKLIPDNP  240
PKAKKIRSEK HSSSSNINFQ QPASSSVSSS IEEPDPEAIA QMKEMIYRAA AFRPVNLGLE  300
VVEKPKRKNV RISTDPQTVA ARQRRERISE RIRVLQKLVP GGSKMDTASM LDEAANYLKF  360
LRSQVKALEN LGNKLDTMNA PPPSNIAFNH SLPMQTHSFP LLNPNDHIHH SQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	321	326	RQRRER

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Flowers. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX577974	1e-89	JX577974.1 Gossypium hirsutum clone NBRI_GE9901 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016678296.1	0.0	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	4e-86	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A1U8IJN6	0.0	A0A1U8IJN6_GOSHI; transcription factor bHLH87-like
STRING	Gorai.011G069200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7960	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-74	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]