PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0489
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 606aa    MW: 66369.8 Da    PI: 8.0121
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0489genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09491539348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g+W++I r        Rt  ++k++w+++l
      Gh_A10G0489 491 AWTLSEVMKLVEGVSKYGAGRWSKIKRLAFasySYRTSVDLKDKWRNLL 539
                      7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.368484543IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-14486546IPR009057Homeodomain-like
SMARTSM007173.8E-10488541IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-16490549IPR009057Homeodomain-like
CDDcd116608.46E-20490540No hitNo description
PfamPF002491.5E-7491539IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MEKVVEVEGS DEGKFEETGL ETSNFVLSSP KNVTDPVVYK LVRVDGNGRL VPATDDELME  60
VEGLLENEKR ETHIVADTGQ ALGCNSNEVS PSGMPQLESS ECLSQSENTE ADTEKLSAYL  120
EETVPSGAKS SSDDHVTQSR RVGVCLKPLD GPLEGGSSTS TGCISSKPDF SKLKGEICLD  180
NLSIKELHEV FKATFGRDTT VKDKLWLKRR IAMGLTNSCD VSTTTFVIKD NKLVKKDNED  240
GFNNVNLGAG KEHLAVAVEY NEDLLNNLSS QIDEHQTTSE VRLGNNVVEN NFASEDLAAD  300
QRAAKRVRKP TKRYIEELSE AESKEYSGRS IASTKNIGFR PLPSKAHARP ARNVSLEGRT  360
VITRLDSLGG FGIQVPCVYR IRRSRPRKNV TALLKFHPSG MGMTATLIKK GFDVHGSQMD  420
NGSMNKVLEA KSTPEQAPEQ FVAESKKETT PTDMGQNMGL KYVDPSGDTS DDNVVTVPTA  480
KGGIRRKHHR AWTLSEVMKL VEGVSKYGAG RWSKIKRLAF ASYSYRTSVD LKDKWRNLLK  540
ASFAQTPTDK GANSRKHPSM PIPAPILLRV RELAEMQAQA SLPNLSTGKL SACGGRSVNE  600
TRPGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381387RRSRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.3990.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016678381.10.0PREDICTED: uncharacterized protein LOC107897438 isoform X2
TrEMBLA0A1U8IJW40.0A0A1U8IJW4_GOSHI; uncharacterized protein LOC107897438 isoform X2
STRINGGorai.011G058300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-124TRF-like 6