PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0412
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 907aa    MW: 100211 Da    PI: 6.3824
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0412genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23130231199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  Gh_A10G0412 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDKNQ 223
                  99*****************************8544444..48************************************************..788888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Gh_A10G0412 224 LLLGIRRA 231
                  9****997 PP
2Auxin_resp120.21.6e-39256339183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Gh_A10G0412 256 AAHAAATNSRFTIFYNPRASPSEFVINLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 339
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-49115259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-42123245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-21129230No hitNo description
PfamPF023625.3E-22130231IPR003340B3 DNA binding domain
SMARTSM010192.8E-24130232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52130232IPR003340B3 DNA binding domain
PfamPF065071.7E-34256339IPR010525Auxin response factor
PfamPF023093.6E-8763864IPR033389AUX/IAA domain
SuperFamilySSF542772.62E-7766850No hitNo description
PROSITE profilePS5174525.028774858IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MRLSSAGFNP PNQEDTAGEK RVLNSELWHA CAGPLVSLPH VGSRVVYFPQ GHSEQVAATT  60
NKEVDAHIPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLSPQEQ KEAYLPAELG  120
TPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL IARDLHDNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND KNQLLLGIRR ANRPQTVMPS  240
SVLSSDSMHL GLLAAAAHAA ATNSRFTIFY NPRASPSEFV INLSKYVKAV YHTRVSVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE  360
PLTTFPMYPS PFPLRLKRPW PPGLPSFHGL KDDDLGMSSL MWLQGDAGRG MQHLNFQGIG  420
VSPWMQPRLD ASMLGLQTDM YQAMAAAALQ EMRTVDPSRS GAASLQFQQP QNGPCRPAAL  480
VQPQMLQQSL PQAILQGVED NQHQSQPHLL QQQLQHQNSF NNQQQHQQQP LFNDQQQQQP  540
QHSMSQQHQQ LVDHQQIPSP VSAMSQYASA SQSQSSPLQS IPSLGQQQSF SDSNGNPVTS  600
PVVSPLHSLL GSFPQDESSN LLNLPRTTPV MTTSAWPSKR AAVDVLSSGS PQCVLPQVEQ  660
LGPSQTNMSQ NSISLPPFPG RECSIDQGGT DPQSHLLFGV NIEPSSVLMQ NGMSGLRGVG  720
TDSDSTSIPF FSNYMSTAGN DFSVNPAMTP SSCIDKSGFL QSQENVGQSN PQTRTFVKVY  780
KSGSFGRSLD ISAFSNYNEL RSELAHMFGL EGQLEDPLRS GWQLVFVDRE NDVLLLGDDP  840
WPEFVNSVGC IKILSPQEVQ QMGQRGLELL NSVPVQRLSN GSCDDYVSRQ DSRNLSSGIA  900
SVGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601436041388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.216820.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016725905.10.0PREDICTED: auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1U8MGJ80.0A0A1U8MGJ8_GOSHI; Auxin response factor
STRINGGorai.011G048200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]