PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G0345 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 306aa MW: 34078.4 Da PI: 9.5029 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51.7 | 2.3e-16 | 32 | 123 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+++ + +L++a ++ +l+rg+l++++W++v++++ + ++ +r+ +qCk++++ ++k+yk +k++ ++ + + +s++p+f++l+a Gh_A10G0345 32 CWSEEATSTLVDAWGRRYVELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKTRVSSSNGTLTSSWPFFERLDA 123 7****************************************99999**************************9999888899*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.3E-26 | 30 | 124 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MADLTDSVMP SAVITPPSTT PNTRTLPVRE DCWSEEATST LVDAWGRRYV ELNRGNLRQK 60 DWQDVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKIE KTRVSSSNGT LTSSWPFFER 120 LDALIGSNFA AKKLSTSPKI SPKPSPRLSP RIPGSPPVAL PLLLPYRRTP PAPTAIVALP 180 QKRPAVDDGY FKRNYSAVAA AAAAAAAESD EEEGEESEGE ESEGEGEERE GMKRLARALE 240 RFGQVYERVE GEKLRQMVEL EKQRMQFAKD LEVQRMRMFM DTQVQLEKIK RGKRSSGSSG 300 EASSSS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.7519 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017649571.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 5e-33 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A0D2UNL7 | 0.0 | A0A0D2UNL7_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8L9J1 | 0.0 | A0A1U8L9J1_GOSHI; trihelix transcription factor ASIL2-like | ||||
STRING | Gorai.011G039600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9635 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 9e-43 | sequence-specific DNA binding transcription factors |