PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G0266 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 686aa MW: 75029.3 Da PI: 6.7208 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.2 | 8.9e-25 | 142 | 243 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ ++ ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++el Gh_A10G0266 142 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyDQ-QRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGEDGEL 236 99****************************9743.345679************************************************..449999* PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ Gh_A10G0266 237 RLGIRRA 243 ****996 PP | |||||||
2 | Auxin_resp | 114.1 | 1.3e-37 | 268 | 350 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnP.rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha+s+ksvF+++YnP ras+seF+v+v k++k+l++++svGmRfkm+fete+++err sG+++g+sdldpvrWp+SkW++L Gh_A10G0266 268 AVHAISMKSVFSIYYNPsRASSSEFIVPVCKFRKSLDHSFSVGMRFKMRFETENAPERRSSGLITGTSDLDPVRWPGSKWKCL 350 79***************7799*************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-41 | 138 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-39 | 139 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.35E-22 | 140 | 242 | No hit | No description |
SMART | SM01019 | 1.6E-22 | 142 | 244 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.465 | 142 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.5E-23 | 142 | 243 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-32 | 268 | 350 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MGCLIDLNTT EEDETPSSCS LSPSSVLSAS GFSSSVCLEL LHACVGPLIS LPKKGSVVVY 60 FPQGHLEQAP EFSGLASVYD LPPHVFCRVL DVKLHAEGAT DEVYAQVSLV PDNEQTEQNL 120 QEVDGDDEDA EADMKLATPH MFCKTLTASD TSTHGGFSVP RRAAEDCFAP LDYDQQRPSQ 180 ELVAKDLHGV EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GEDGELRLGI 240 RRAAQIKNGA SFLSLCSKQL NRRTFADAVH AISMKSVFSI YYNPSRASSS EFIVPVCKFR 300 KSLDHSFSVG MRFKMRFETE NAPERRSSGL ITGTSDLDPV RWPGSKWKCL SVRWDDIDAN 360 KHGRVSPWEI ELSGSISSSN CLLSPCSKRN RVGLPSGKPE FMVPDGIGAP DFGEPLRFQK 420 VLQGQEILGF STLYNGADSH NMHRSEIRRC FPGSNGSGIA TIGNVGRDPP LNPVISYKGV 480 GFGESFGFHK VLQGQEIFLS SLYRKGSTME ETRGNDSAGL TNVGQMSGTR SGWSSSMQGY 540 NTHSPVQPSV QVSSPSSVLM FQQASNPVPN FNPARNFNQE MERGVSSFRV PETYGAKLLS 600 SSISEHDSQP LAAQPSFGTN QELASCKNSC RLFGFSLTEG DLDATKEDSV VHATLSLGRG 660 SLLPCIGENF HPNPPAVTST VWKQLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldx_A | 1e-112 | 32 | 381 | 15 | 363 | Auxin response factor 1 |
4ldx_B | 1e-112 | 32 | 381 | 15 | 363 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.20537 | 0.0 | boll| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected during gynoecium development. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:9409666}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017646679.1 | 0.0 | PREDICTED: auxin response factor 3-like isoform X1 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A1U8L9R4 | 0.0 | A0A1U8L9R4_GOSHI; Auxin response factor | ||||
STRING | Gorai.011G030900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4924 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |