PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0075
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 786aa    MW: 86344.2 Da    PI: 6.6252
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0075genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.5e-09739784447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      WT eE++ l+++ + +G+  Wk+I +      k+Rt  ++k++w+++
      Gh_A10G0075 739 WTLEEEQALIKGYRVYGPQ-WKLIRESYWdilKKRTQVDLKDKWRNL 784
                      *****************88.*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.796731786IPR017930Myb domain
SuperFamilySSF466894.24E-10738784IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-9739784IPR009057Homeodomain-like
PfamPF139212.1E-7739785No hitNo description
CDDcd116601.63E-15739786No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MGDSFPLFND CDPAVLSTLK QYLSQPNNND EDNGDGYATF CFHYKGAILR SIEQRTGNST  60
VPDAVLDSLI LIENLDRRRG FLPSESMKAA FCAVAVHCTV SCLPVSWDNY FDAFHRIWGL  120
RIKSLEESGY LEEAFRSMNP ALSQLASAST TEPTVDHVAS ANPHPSTDEG NMDNVVSASA  180
QVPSSPHPCI DERNMDNVVY SSAQVPSSPH PCSDEGNISP SPHPCADKGN VDNVTSAAAQ  240
VPSSPHPCTN KKNKIRRASF QARHKPRPRC KQRRGVVITD MEEDQPLCIK NGTPSSFEVN  300
GCLQVSSKTR SAALLDGVTD SPFEALEVVE TVASVMAGKN FCPKGSMEDS NKDKGDPTAS  360
FYPTTHHCTD KGKQIQMVNS QTSGNPNSSH RHCEEPAAIA DTEEDRVLST PNIDKLRDAL  420
TSSVADLTAS VTDPLPKALE VAERLVSFME AAKSSSAEGA EGDVRKEKGV PAASMNCNFE  480
RAQADRREPD KAIREDQDKM NRSVPADLTA TVADSLPKAL EVAERLVSFM AAAKSLSTEG  540
AEGDVRKEKG VPAAPMNCNF EQAQAERRAP DKAIREDQDK MGRSVPASSV GHGVQPSQAT  600
EGNETFIRPK KVPKRNLMKR NDAAHTHERR APYEGIREDY NKVDGSVPAP SVNHIAEPSH  660
AKEGNEAVIR PKKVRKRSIM ERNDTAHTSE WEDSIDGSDG GTSGCSNRCT LPSPKTNHVS  720
PLKESEPQKQ KNRRKTNWWT LEEEQALIKG YRVYGPQWKL IRESYWDILK KRTQVDLKDK  780
WRNLSK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615537.10.0PREDICTED: uncharacterized protein LOC108460533 isoform X1
TrEMBLA0A0B0MBZ00.0A0A0B0MBZ0_GOSAR; Telomeric DNA-binding factor trf1
STRINGGorai.011G008700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2214245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.14e-12TRF-like 5