PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G2473
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 467aa    MW: 49635.7 Da    PI: 6.5897
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G2473genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047322344123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C++sF++   L  H+ +H
  Gh_A09G2473 322 HECKTCNRSFPSFQALGGHMASH 344
                  78******************999 PP
2zf-C2H212.50.00044380402123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F++   L  H+r+H
  Gh_A09G2473 380 HECSICGSEFTSGQALGGHMRRH 402
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.40.2005.9E-5862207IPR001424Superoxide dismutase, copper/zinc binding domain
SuperFamilySSF493294.32E-5563207IPR001424Superoxide dismutase, copper/zinc binding domain
CDDcd003058.59E-6463206IPR001424Superoxide dismutase, copper/zinc binding domain
PfamPF000805.8E-4471207IPR001424Superoxide dismutase, copper/zinc binding domain
PROSITE patternPS000870104114IPR018152Superoxide dismutase, copper/zinc, binding site
PRINTSPR000684.6E-43104126IPR001424Superoxide dismutase, copper/zinc binding domain
PRINTSPR000684.6E-43140149IPR001424Superoxide dismutase, copper/zinc binding domain
PRINTSPR000684.6E-43159181IPR001424Superoxide dismutase, copper/zinc binding domain
PRINTSPR000684.6E-43184210IPR001424Superoxide dismutase, copper/zinc binding domain
PfamPF139121.8E-13321346IPR007087Zinc finger, C2H2
PROSITE profilePS501579.785322349IPR007087Zinc finger, C2H2
SMARTSM003550.019322344IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.62E-9322344No hitNo description
PROSITE patternPS000280324344IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.5E-4375402IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.62E-9375402No hitNo description
PROSITE profilePS501579.868380407IPR007087Zinc finger, C2H2
PfamPF139126.0E-11380403IPR007087Zinc finger, C2H2
SMARTSM003550.019380402IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280382402IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006801Biological Processsuperoxide metabolic process
GO:0010039Biological Processresponse to iron ion
GO:0035195Biological Processgene silencing by miRNA
GO:0046688Biological Processresponse to copper ion
GO:0055114Biological Processoxidation-reduction process
GO:0071329Biological Processcellular response to sucrose stimulus
GO:0071457Biological Processcellular response to ozone
GO:0071472Biological Processcellular response to salt stress
GO:0071484Biological Processcellular response to light intensity
GO:0071493Biological Processcellular response to UV-B
GO:0009570Cellular Componentchloroplast stroma
GO:0009579Cellular Componentthylakoid
GO:0048046Cellular Componentapoplast
GO:0003676Molecular Functionnucleic acid binding
GO:0004784Molecular Functionsuperoxide dismutase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAAHIFTTTP SHLALSFPSS TNPSNPPVLL SSFRGVSLKL PRQSLSLAAT IPKKPFSVFA  60
VTKKAVAVLK GNSEVEGVVT LTQENDGPTT VNVRITGLTP GPHGFHLHEY GDTTNGCMST  120
GAHFNPNNMT HGAPEDEVRH AGDLGNIIAN ADGVAEATIV DNQIPLSGPN AVVGRAFVVH  180
ELEDDLGKGG HELSLTTGNA GGRLACGEGV DMQAQAVFVG SDHHHQEALI MKGKRTKRQR  240
SPSLFGVAVT SSSSNGGDGV VEEYNSISSP MTSDEIYEST EEEEEMANCL IMLAQSDGPK  300
RSTVEAKFKI ATKTNKGELY VHECKTCNRS FPSFQALGGH MASHKKPKGA IAEQKRPLVL  360
AVNDAVIALR VSNKKGNKIH ECSICGSEFT SGQALGGHMR RHRTASAAAA SNQDAMNGND  420
DIKPRNITPL DLNLPAPEDD VRDSMFEFGT PQQAIVFSTP ALVDCHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rvp_A2e-92582072151superoxide dismutase
4rvp_B2e-92582072151superoxide dismutase
4rvp_C2e-92582072151superoxide dismutase
4rvp_D2e-92582072151superoxide dismutase
4rvp_E2e-92582072151superoxide dismutase
4rvp_F2e-92582072151superoxide dismutase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.81530.0boll| embryo| leaf| ovule| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO719801390.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0888190.0DQ088819.1 Gossypium hirsutum chloroplast Cu/ZnSOD mRNA, complete cds; nuclear gene for chloroplast product.
GenBankEU5972680.0EU597268.1 Gossypium hirsutum chloroplast Cu/Zn superoxide dismutase (CSD2a) mRNA, complete cds; nuclear gene for chloroplast product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668868.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2P5S1J80.0A0A2P5S1J8_GOSBA; Uncharacterized protein
STRINGGorai.006G104800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-60C2H2 family protein