PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G2392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 25829.1 Da PI: 9.3586 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.9 | 2.3e-13 | 59 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +g+W++ Ed++l d++ ++G g+W++ ++ + R++k+c++rw +yl Gh_A09G2392 59 KGAWSKLEDQKLTDYILKHGEGCWRSLPQAAAgLLRCGKSCRLRWVNYL 107 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 113 | 155 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+ Gh_A09G2392 113 RGKFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNHWN 155 89********************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-21 | 50 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.532 | 54 | 107 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.84E-26 | 57 | 154 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-10 | 58 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-11 | 59 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.11E-8 | 61 | 107 | No hit | No description |
PROSITE profile | PS51294 | 27.064 | 108 | 162 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 110 | 162 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 112 | 160 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 113 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.20E-11 | 115 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MAAGDKHKPL FIYIYILLVS LFISPPLPLF WSVAFACLNS LPLGLQMRKP CCEKKDTNKG 60 AWSKLEDQKL TDYILKHGEG CWRSLPQAAA GLLRCGKSCR LRWVNYLRPD LKRGKFGEDE 120 EDLIIKLHAL LGNRWSLIAG RLPGRTDNEV KNHWNIHLKK KLLMMGIDPN NRRSLLSPTL 180 TKSNASNDSS SACQPFNPAT ASEAISCTCL PDLNLDLTIA PPLSHQNLAL N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 56 | 162 | 4 | 108 | B-MYB |
1h8a_C | 1e-27 | 58 | 162 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ459165 | 3e-70 | AJ459165.1 Gossypium hirsutum partial myb135 gene, clone pGhMYB135. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486405.1 | 1e-145 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 8e-72 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A0D2S646 | 1e-144 | A0A0D2S646_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G192400.1 | 1e-144 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 5e-71 | myb domain protein 3 |
Publications ? help Back to Top | |||
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