PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G2380
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 256aa    MW: 29309 Da    PI: 6.7787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G2380genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-152572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv+  + +G  +W+++++  g++R++k+c++rw +yl
      Gh_A09G2380 25 KGPWTAEEDKKLVNFMRTHGYYCWRAVPKLAGLRRCGKSCRLRWTNYL 72
                     79********************************************97 PP
2Myb_DNA-binding51.62.2e-1683122647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
      Gh_A09G2380  83 HDEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 122
                      68***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-221673IPR009057Homeodomain-like
PROSITE profilePS5129415.3012072IPR017930Myb domain
SuperFamilySSF466892.38E-2722119IPR009057Homeodomain-like
SMARTSM007175.0E-122474IPR001005SANT/Myb domain
PfamPF002492.5E-142572IPR001005SANT/Myb domain
CDDcd001674.87E-92772No hitNo description
PROSITE profilePS5129426.53873127IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-2474128IPR009057Homeodomain-like
SMARTSM007174.7E-1477125IPR001005SANT/Myb domain
PfamPF002491.5E-1483122IPR001005SANT/Myb domain
CDDcd001672.54E-1084123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVGVDWCKMR GTGRQPCCDK LGVKKGPWTA EEDKKLVNFM RTHGYYCWRA VPKLAGLRRC  60
GKSCRLRWTN YLRPDLKRGL LNHDEEQLVI DLHARLGNRW SKIAARLPGR TDNEIKNHWN  120
THIKKKLIKM GIDPATHEPL QKPDTPENKP NLDPNQPENL SKSCAHEFSL PTGTDEWRSS  180
WESDDDPSIN LIWSEAFLHD LSENFHGTDS WWKEYSEIGT SSKEETCFSW LVGDAGDDDG  240
NLGFSGFSEI LGMNLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27251277108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.185230.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}.
UniprotTISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}.
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6517830.0EF651783.1 Gossypium hirsutum transcription factor TF1 (TF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618403.10.0PREDICTED: protein ODORANT1-like
SwissprotQ50EX68e-82ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0B0PKI00.0A0A0B0PKI0_GOSAR; Protein ODORANT1
TrEMBLA0A1U8LRQ20.0A0A1U8LRQ2_GOSHI; protein ODORANT1-like
STRINGGorai.006G195700.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.14e-85myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]