PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G2358

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 238aa MW: 26623 Da PI: 7.6068

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G2358	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.8	4.8e-38	23	83	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+s+ntkfCyynnysl qPryfCk+CrryWt+GG+lrn+PvGg +rknk+ s Gh_A09G2358 23 KQQALNCPRCNSMNTKFCYYNNYSLRQPRYFCKTCRRYWTEGGSLRNIPVGGCSRKNKRPS 83 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.4E-32	25	81	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.379	27	81	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-21	27	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	29	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
EIVTNACSKP ADLERKAAAK PQKQQALNCP RCNSMNTKFC YYNNYSLRQP RYFCKTCRRY 60 WTEGGSLRNI PVGGCSRKNK RPSSSSNKLP DLVNNPKIHG GQDLNLAYPV SEVYTTSMSE 120 FVEVPDSSVE NNKKEIPPSL FPRCHVSALE LVTGMSSKGS DPFIPMPVPD PNTVYTPGFP 180 LQEYKPMLNF CVDEVEETNG RLLFPFQDLK QTTDNEDNKE QGDSSAGFWN GMLGGASW

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX618042	1e-145	JX618042.1 Gossypium hirsutum clone NBRI_GE63365 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016717268.1	1e-179	PREDICTED: dof zinc finger protein DOF1.8-like isoform X1
Refseq	XP_016717269.1	1e-179	PREDICTED: dof zinc finger protein DOF1.8-like isoform X2
TrEMBL	A0A1U8LV11	1e-177	A0A1U8LV11_GOSHI; dof zinc finger protein DOF1.8-like isoform X1
TrEMBL	A0A1U8LVK8	1e-177	A0A1U8LVK8_GOSHI; dof zinc finger protein DOF1.8-like isoform X2
STRING	Gorai.006G206100.1	1e-158	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	2e-45	Dof family protein