PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G2312

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 414aa MW: 45049.1 Da PI: 6.3805

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G2312	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.9	5e-09	216	265	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 kr++r NR +A rs +RK +i+eLe+k+++L++e ++L+ +l l++ Gh_A09G2312 216 KRAKRIWANRQSAARSKERKMRYIAELERKIQTLQTEATSLAAQLTLLQQ 265 9*****************************************99999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-10	212	277	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.979	214	266	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.27E-10	216	265	No hit	No description
Pfam	PF00170	5.9E-8	216	265	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-7	216	265	No hit	No description
CDD	cd14703	9.64E-24	217	265	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MEKDKSPCLP PMSGRVPGFS SSGNAANTSN TISETGNLGQ TSDSNRFSHD ISKMPDNPPK 60 NLGHRRAHSE IITLPDDINF DGDLGVVGAA DGPSYSDETE DDMLSMYLDI DKFNSSSVTS 120 MFQVAKSSAM TAPNSGPSAA VSMGAGTATS GEENASAGVG SSEKPRIRHQ HSQSMDGSTS 180 IKPEMLLSGS DEVTPADSKK AMSAAKLAEL ALIDPKRAKR IWANRQSAAR SKERKMRYIA 240 ELERKIQTLQ TEATSLAAQL TLLQQKDSTG MSAENSELKL RLQTMEQQVY LQDSLNDALK 300 EEIQHLKVLT AQPMPNGGPM MNFASFGASQ QYIPNNHAMQ ALLTAQQFQQ LQIQLQKHQH 360 QFPPHQLHQL QQQLQLQQEH QQQSGEMRVR GSMPSPNRRD GPSSSDVSST ASND

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MEKDKSPCLP PMSGRVPGFS SSGNAANTSN TISETGNLGQ TSDSNRFSHD ISKMPDNPPK  60
NLGHRRAHSE IITLPDDINF DGDLGVVGAA DGPSYSDETE DDMLSMYLDI DKFNSSSVTS  120
MFQVAKSSAM TAPNSGPSAA VSMGAGTATS GEENASAGVG SSEKPRIRHQ HSQSMDGSTS  180
IKPEMLLSGS DEVTPADSKK AMSAAKLAEL ALIDPKRAKR IWANRQSAAR SKERKMRYIA  240
ELERKIQTLQ TEATSLAAQL TLLQQKDSTG MSAENSELKL RLQTMEQQVY LQDSLNDALK  300
EEIQHLKVLT AQPMPNGGPM MNFASFGASQ QYIPNNHAMQ ALLTAQQFQQ LQIQLQKHQH  360
QFPPHQLHQL QQQLQLQQEH QQQSGEMRVR GSMPSPNRRD GPSSSDVSST ASND

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2275	0.0	boll\| ovule\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016748118.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_016748119.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-142	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A1U8PCW4	0.0	A0A1U8PCW4_GOSHI; probable transcription factor PosF21
STRING	Gorai.006G229500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-119	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]