PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G2227 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 340aa MW: 39449.5 Da PI: 5.8777 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.1 | 9.2e-36 | 43 | 135 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+i++d+ ++++isws +nsf+v+d++ f+ +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+++ll++i+ Gh_A09G2227 43 FLTKTYDIIDDSGTNHIISWSGGNNSFIVWDPQAFSMILLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEKFLRGQRHLLKTIR 130 9********************999*****************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Gh_A09G2227 131 RRKTQ 135 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.2E-38 | 37 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.13E-35 | 39 | 132 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.6E-58 | 39 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.4E-19 | 43 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.2E-30 | 43 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.4E-19 | 81 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 82 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.4E-19 | 94 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MNPYERIKQE FQGTSSSSYH GDIPSMATPQ PIEGLHEGGP PPFLTKTYDI IDDSGTNHII 60 SWSGGNNSFI VWDPQAFSMI LLPRYFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEKFLR 120 GQRHLLKTIR RRKTQQIQAS YGGLDPCVEV GRFGVDVDID RLKRDKQVLM AELVKLRQQQ 180 HNTKTYLQVM EERLKKTEMK QQQMMNFLAK AMKNPNFVQQ LIQQKDKRKE LEEAITNKRR 240 RRIDNHNQTF VKAEPVESFG GAFEVVELDG MVMDLQEKHD EEHGSCYDKG KRIDDEGFWN 300 DLLNDDMEEE ISALQVNGVE DEEGIDVLVE QLGFLGSSPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-23 | 38 | 134 | 12 | 122 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 226 | 241 | KRKELEEAITNKRRRR |
2 | 237 | 242 | KRRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ748622 | 0.0 | KJ748622.1 Gossypium hirsutum HSF19 (HSF19) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605705.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b-like | ||||
Swissprot | Q9LUH8 | 1e-123 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A0B0PIA9 | 0.0 | A0A0B0PIA9_GOSAR; Heat stress transcription factor A-6b-like protein | ||||
TrEMBL | A0A2P5WGM1 | 0.0 | A0A2P5WGM1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G242400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-126 | heat shock transcription factor A6B |