PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G2211
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 175aa    MW: 19944.6 Da    PI: 10.4762
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G2211genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65.1e-12101143547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      T+eE+  ++ + ++lG+g+W+ I++ +  +Rt+ q+ s+ qky
      Gh_A09G2211 101 TEEEHRTFLAGLRKLGKGDWRGISKNFVPTRTPTQVASHAQKY 143
                      9***************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.17292148IPR017930Myb domain
SuperFamilySSF466891.12E-1495148IPR009057Homeodomain-like
SMARTSM007173.6E-796146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10101142IPR009057Homeodomain-like
PfamPF002497.6E-10101143IPR001005SANT/Myb domain
CDDcd001674.62E-9101144No hitNo description
TIGRFAMsTIGR015571.7E-14101147IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MVKEAGRKCS HCGHNGHNSR TCYVHNSRCC NGKGGCVKLF GVKIGAMYQK QENVMKKSFS  60
MGNLQSHAEN NNDDDGYFSD GQIQSKKHKA SHERKRGKPR TEEEHRTFLA GLRKLGKGDW  120
RGISKNFVPT RTPTQVASHA QKYFLRQAGT DKKKRRPSLF DMEFQEFGSV RYCLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151155KKKRR
2151156KKKRRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609309.11e-123PREDICTED: uncharacterized protein LOC108455236
SwissprotQ9FKF91e-58M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A2P5VY251e-124A0A2P5VY25_GOSBA; Uncharacterized protein
STRINGGorai.006G274300.11e-122(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.15e-61MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]