PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G2142
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 281aa    MW: 32752 Da    PI: 5.2032
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G2142genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.63.8e-26113162352
       RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  k +s e +s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl
  Gh_A09G2142 113 KMLSREIISQYFYMPITKAAKELKVGLTLLKKRCRELGIRRWPHRKLMSL 162
                  78999******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.38296183IPR003035RWP-RK domain
PfamPF020423.3E-21115162IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGSNCSFNGW SNEGCSSSFP QPPDSSLFYN SMVDNEFSIQ DMSFYDTAPL MNSFCNADVE  60
QNPNLTQENG FWNELGTLFE PENQKFLKVN NGRHSGEQRL MREKKTKNFN NAKMLSREII  120
SQYFYMPITK AAKELKVGLT LLKKRCRELG IRRWPHRKLM SLQTLTKNLQ VLDREEREGS  180
EGKLREAMEA LRKEREMLEE MPNMELDDRT KRLRQACFKA NYKKRKMMMM VMEEEPSRLA  240
AEAFGSNNDG SRRNEEEEDD DEEIKYLLSD SFSSSTDLGL L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00234DAPTransfer from AT1G74480Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609297.11e-172PREDICTED: protein RKD2-like
TrEMBLA0A2P5WCT80.0A0A2P5WCT8_GOSBA; Uncharacterized protein
STRINGGorai.006G266900.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.13e-48RWP-RK domain-containing protein