PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G2126
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 293aa    MW: 32712.3 Da    PI: 6.0995
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G2126genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31151210159
                  ---SS-EEEEEEE--TT-SS-.EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefp.rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+s++p rsYYrCts+gC vkk+vers +d++++++tYeg+H+h+
  Gh_A09G2126 151 LDDGYRWRKYGQKAVKNSPYPsRSYYRCTSSGCGVKKRVERSFDDTTIIITTYEGKHTHP 210
                  59******************889************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-32136212IPR003657WRKY domain
SuperFamilySSF1182904.71E-27144212IPR003657WRKY domain
PROSITE profilePS5081129.953146212IPR003657WRKY domain
SMARTSM007741.4E-35151211IPR003657WRKY domain
PfamPF031061.2E-24152210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MRFSDENSTA AAESSGGDGG GDKWDSLGFM ELLGIHQDFF ESFIQQPALI LSPPLLQLDT  60
EQKPQAGLQL QPYSTVSDFS ECLSNPPATP NSSSISSLSN EAANINEQST NAGDDEEQDK  120
TKKRLKHKGK NQKKQKEPRF AFITKTEIDH LDDGYRWRKY GQKAVKNSPY PSRSYYRCTS  180
SGCGVKKRVE RSFDDTTIII TTYEGKHTHP CPVPPRGSGF DNIGLTPSFM VHHQYQDQQQ  240
QEVEQPYMYA SLSPLNPCFS PNGSSSASLI RDHGLLQDIV LPIKMRNEAN EQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-26139212274WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.31930.0ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738658800.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384720.0KM438472.1 Gossypium aridum WRKY78 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016723159.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229008e-49WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A1U8MC750.0A0A1U8MC75_GOSHI; probable WRKY transcription factor 23
STRINGGorai.006G265200.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56242648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.12e-43WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]