PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G2077 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 29693.4 Da PI: 8.9962 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.3e-21 | 93 | 141 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg++ taeeAa+a+++a+k+++g Gh_A09G2077 93 YRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTYNTAEEAARAYDEAAKRIRG 141 9*******.**********94....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.052 | 92 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 92 | 150 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-37 | 92 | 155 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-14 | 93 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 93 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 93 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.76E-34 | 93 | 151 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MCGGAIISDF VAVKHDPKLT GDDLWSEIDI FSDLLGFDNN GKSFVNHQFH NNNKKLINPK 60 DNQLNKERSE TIQKTSRVTK NVEKTQRTRK NFYRGIRQRP WGKWAAEIRD PQKGVRVWLG 120 TYNTAEEAAR AYDEAAKRIR GDKAKLNFPQ TPTKNQAASP ALTQLPPAKK RCIVPELTQP 180 SFQTDSPPYP MGLGSGRSED YKPIEVVESE LELKEQIWSL ESFLGLETNH ETMTQLSGNG 240 GTDSLELWTL DDLVTQYKQR R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-23 | 93 | 149 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.7874 | 0.0 | ovule| stem |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY962572 | 0.0 | AY962572.1 Gossypium hirsutum cultivar Xinhai14 putative ethylene responsive element binding protein 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314374.1 | 0.0 | ethylene-responsive transcription factor RAP2-3-like | ||||
TrEMBL | Q56E94 | 0.0 | Q56E94_GOSHI; Putative ethylene responsive element binding protein 3 | ||||
STRING | Gorai.006G260300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-53 | ethylene-responsive element binding protein |
Publications ? help Back to Top | |||
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