PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G1985
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 134aa    MW: 15219 Da    PI: 8.6688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G1985genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.6e-201768256
          AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +g+++AeIrd    + + +r++lg+f taeeAa+a+++a+ +++g+
  Gh_A09G1985 17 RYRGVRRRP-WGKFAAEIRDS---NrQGTRVWLGTFNTAEEAARAYDRAAYAMRGH 68
                 6********.**********4...3345**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.21E-181676No hitNo description
SuperFamilySSF541717.85E-241777IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-321777IPR001471AP2/ERF domain
PfamPF008474.9E-161768IPR001471AP2/ERF domain
PROSITE profilePS5103223.7091775IPR001471AP2/ERF domain
SMARTSM003806.2E-351781IPR001471AP2/ERF domain
PRINTSPR003675.9E-121829IPR001471AP2/ERF domain
PRINTSPR003675.9E-124157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEGKSTGKEG TRSEPARYRG VRRRPWGKFA AEIRDSNRQG TRVWLGTFNT AEEAARAYDR  60
AAYAMRGHLA ILNFPHEYPM GCDDANAYCR SSSAGSSSSS SLMERGKQVF EIEYLDDNLL  120
EELLEIEEKK KKKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-4071194114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5841502e-45JX584150.1 Gossypium hirsutum clone NBRI_GE17372 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609350.14e-96PREDICTED: ethylene-responsive transcription factor ERF096
SwissprotQ9LTC55e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D2S9897e-62A0A0D2S989_GOSRA; Uncharacterized protein
TrEMBLA0A2P5RFT37e-62A0A2P5RFT3_GOSBA; Uncharacterized protein
STRINGGorai.006G249800.11e-62(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.18e-27ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]