PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G1447

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 838aa MW: 93255.6 Da PI: 8.4041

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G1447	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.4	1.4e-28	108	164	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK +k++++prsYY+C ++C++kk+vers+++p++++itYeg H h Gh_A09G1447 108 DDGYKWRKYGQKWIKNTPNPRSYYKCRNPRCSAKKQVERSKDEPDTLIITYEGFHLH 164 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118290	2.48E-24	105	164	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.1E-26	105	164	IPR003657	WRKY domain
PROSITE profile	PS50811	25.511	106	167	IPR003657	WRKY domain
SMART	SM00774	2.8E-32	107	166	IPR003657	WRKY domain
Pfam	PF03106	1.3E-23	108	164	IPR003657	WRKY domain
Gene3D	G3DSA:3.40.50.300	7.7E-47	430	598	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52540	1.08E-46	433	630	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00382	5.8E-11	469	633	IPR003593	AAA+ ATPase domain
CDD	cd00009	2.83E-15	470	595	No hit	No description
Pfam	PF00004	2.9E-29	475	597	IPR003959	ATPase, AAA-type, core
Gene3D	G3DSA:1.10.8.60	2.1E-9	599	643	No hit	No description
SuperFamily	SSF140990	1.83E-35	640	793	No hit	No description
Pfam	PF01434	1.0E-30	659	778	IPR000642	Peptidase M41

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006508	Biological Process	proteolysis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0004222	Molecular Function	metalloendopeptidase activity
GO:0005524	Molecular Function	ATP binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MEKEQKDDRF GCEDELVREL LDDESPLFVL QQGAKSKTSG EDSTKRLICA GPRIEDIQNA 60 LSLKTWNGTQ YQVQQQNRIN SIQQERGLTK IENKYTLKIK NYGNCMADDG YKWRKYGQKW 120 IKNTPNPRSY YKCRNPRCSA KKQVERSKDE PDTLIITYEG FHLHFAYPYL PLDNHHQPSP 180 DDTISPAKKA KQGISEAESQ VPETIANYTN IEPLPSSIEG CPPEMSLEAG FSQQGLLEDV 240 VPWVIRNPSH NNNISSISSS SSSSNYSRSP PASPYSLSTS PFYDPYLDIL SINSSIRGYF 300 ALAEAGKKLV LNARLSILDS ILGNPRIRRL FSSGGPKKRR SVESFEEKLE EVQEALGIDP 360 HNYVPVTYVS EVNRFQELLR FGPTLLLLGT FWFMGRRMQS GFEVGDPGGR GGRGIFNIGK 420 AQIKKMDKNA KDKVLFNDVA GCDEAKQEIM EFVHFLKNPK KYEELGAKIP KGAFFVGLSG 480 TGKTLLAKAT AGESGVPFLS MSGSDFMKMF VGVGPSRVRS LFQEARQCAP SIIFIDEIDA 540 IGRARGRGGF SGGNGEREST LNQLLVEMRG FGTTSGVVGF DGTNRPNILD RALLRPADIA 600 NVFNEAALIA ARNGSAVITM EHFEAAVDRV IGGLEKKNKV ISKLESRTVA YHESGHAVAG 660 FAQYVPNENL LMTKEQLSDV TCMTLGGRDA KQVLLRKIST GAHSDLKKVT KMTYAQVAVY 720 GFSDKVGLLS FPQRDAFEMT KPYSSKTGAI IDSEVRKWVV KAYERTMQLI EEHKEHVTQE 780 DLVRLLGKRP FKSSEPTNYE RFKQGFQEEN KEPKDTKDEG RTAGDDGSTP LEPEVVPA

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MEKEQKDDRF GCEDELVREL LDDESPLFVL QQGAKSKTSG EDSTKRLICA GPRIEDIQNA  60
LSLKTWNGTQ YQVQQQNRIN SIQQERGLTK IENKYTLKIK NYGNCMADDG YKWRKYGQKW  120
IKNTPNPRSY YKCRNPRCSA KKQVERSKDE PDTLIITYEG FHLHFAYPYL PLDNHHQPSP  180
DDTISPAKKA KQGISEAESQ VPETIANYTN IEPLPSSIEG CPPEMSLEAG FSQQGLLEDV  240
VPWVIRNPSH NNNISSISSS SSSSNYSRSP PASPYSLSTS PFYDPYLDIL SINSSIRGYF  300
ALAEAGKKLV LNARLSILDS ILGNPRIRRL FSSGGPKKRR SVESFEEKLE EVQEALGIDP  360
HNYVPVTYVS EVNRFQELLR FGPTLLLLGT FWFMGRRMQS GFEVGDPGGR GGRGIFNIGK  420
AQIKKMDKNA KDKVLFNDVA GCDEAKQEIM EFVHFLKNPK KYEELGAKIP KGAFFVGLSG  480
TGKTLLAKAT AGESGVPFLS MSGSDFMKMF VGVGPSRVRS LFQEARQCAP SIIFIDEIDA  540
IGRARGRGGF SGGNGEREST LNQLLVEMRG FGTTSGVVGF DGTNRPNILD RALLRPADIA  600
NVFNEAALIA ARNGSAVITM EHFEAAVDRV IGGLEKKNKV ISKLESRTVA YHESGHAVAG  660
FAQYVPNENL LMTKEQLSDV TCMTLGGRDA KQVLLRKIST GAHSDLKKVT KMTYAQVAVY  720
GFSDKVGLLS FPQRDAFEMT KPYSSKTGAI IDSEVRKWVV KAYERTMQLI EEHKEHVTQE  780
DLVRLLGKRP FKSSEPTNYE RFKQGFQEEN KEPKDTKDEG RTAGDDGSTP LEPEVVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6nyy_A	1e-136	409	818	14	510	AFG3-like protein 2
6nyy_B	1e-136	409	818	14	510	AFG3-like protein 2
6nyy_C	1e-136	409	818	14	510	AFG3-like protein 2
6nyy_D	1e-136	409	818	14	510	AFG3-like protein 2
6nyy_E	1e-136	409	818	14	510	AFG3-like protein 2
6nyy_F	1e-136	409	818	14	510	AFG3-like protein 2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable ATP-dependent zinc metallopeptidase. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669838	0.0	KF669838.1 Gossypium hirsutum WRKY transcription factor 38 (WRKY38) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483104.1	0.0	PREDICTED: LOW QUALITY PROTEIN: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial
Swissprot	Q0DHL4	0.0	FTSH8_ORYSJ; ATP-dependent zinc metalloprotease FTSH 8, mitochondrial
TrEMBL	A0A068LDA6	0.0	A0A068LDA6_GOSHI; WRKY transcription factor 38
STRING	Gorai.006G171800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35584	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	4e-42	WRKY DNA-binding protein 49

Publications ? help Back to Top
Yu F,Park S,Rodermel SR Functional redundancy of AtFtsH metalloproteases in thylakoid membrane complexes. Plant Physiol., 2005. 138(4): p. 1957-66 [PMID:16040665] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]