PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G1336
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 482aa    MW: 54468.5 Da    PI: 6.3639
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G1336genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.78.4e-25116217186
     trihelix   1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                  +Wt+++v++Li a+ +++++ +++                +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +++ +++++++ +++
  Gh_A09G1336 116 KWTDSMVKLLIMAVYYIGDEGGSEGngsdptakkkaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGtACKVVENQSLL 213
                  7**************9999998643366788889999999**********************************************55********** PP

     trihelix  83 dqle 86 
                  d+++
  Gh_A09G1336 214 DSMD 217
                  *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.8E-22114242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MDTSGVSGGV FSGIGSGMLG LEMPLHPQHH QHQQPARNPQ TAPNLHHLQQ NPQMVGFPHQ  60
ETDHSLHQQS VKQGGYPFGS KAKQTSPLSD EDEHGFNPDD ASADAKRKGS PWQRMKWTDS  120
MVKLLIMAVY YIGDEGGSEG NGSDPTAKKK AGGLLQKKGK WKSVSRAMME KGFYVSPQQC  180
EDKFNDLNKR YKRVNDILGR GTACKVVENQ SLLDSMDLSP KMKEEVKKLL NSKHLFFREM  240
CAYHNSCGHV ATAGAHQSPV VATEISQTQH QQAQCLHSSE NAQIAGRIET EASKLSKVGS  300
EEEDDDEDED DEDEDDDDDD DDEAVDGHSR GQNGHGKEDD EDNNEKPSHK RPRKGAFSMS  360
PSPLMQQLSC EVVNVIQDGS KSAWEKKHWM KMRLVQLEEQ QVSYQYQAFQ LEKQRLKWVK  420
FSGKKEREME RAKLENERRR LENERMVLLV KQKELELVDV QQQHLSQQHS CSKRRDPSNI  480
SG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.262010.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017611963.10.0PREDICTED: uncharacterized protein LOC108457420 isoform X1
TrEMBLA0A1U8JMG30.0A0A1U8JMG3_GOSHI; myb-like protein V
STRINGGorai.006G159000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-72sequence-specific DNA binding transcription factors