PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G1326

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 274aa MW: 30314.5 Da PI: 7.0379

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G1326	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	97.2	1.1e-30	40	142	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k ltpsdv+k++rlv+pk++ae++ + + ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F ++++++ +++ Gh_A09G1326 40 FEKPLTPSDVGKLNRLVIPKQHAEKYfplaaD-SVDKGLLLSFEDESGKFWRFRYSYWNSSQSYVLTKGWSKYVKEKQLDAGDIILFLRHRSDGDRFF 136 99*************************963.3457789**********************************************8776777778 PP EEEE-S CS B3 94 vkvfrk 99 ++ +r+ Gh_A09G1326 137 IGCRRR 142 888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.2E-42	34	149	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.8E-31	38	142	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.64E-29	38	141	No hit	No description
PROSITE profile	PS50863	13.93	40	143	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.0E-28	40	142	IPR003340	B3 DNA binding domain
SMART	SM01019	4.3E-25	40	142	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MFFSSNHPSL SFNFNQHEDH SESEINPNQS HPDHGMEPMF EKPLTPSDVG KLNRLVIPKQ 60 HAEKYFPLAA DSVDKGLLLS FEDESGKFWR FRYSYWNSSQ SYVLTKGWSK YVKEKQLDAG 120 DIILFLRHRS DGDRFFIGCR RRGAPSAPAD AGNTLMGNNT SCGGGGDTRG LYHGHPYLGH 180 IQGHAANLPY RPGCLHAGSI VENEGIAAGN PRRLVRLFGV NLECQLDGSE PSTPENSSSV 240 SVSSQQGPTT HQFYNSQLSY TSNYMVSHAS SLSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-46	37	142	5	113	B3 domain-containing transcription factor NGA1
5os9_B	2e-46	37	142	5	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.1993	1e-111	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017610095.1	0.0	PREDICTED: B3 domain-containing protein At2g36080-like
Swissprot	Q8GYJ2	4e-67	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A2P5WEK6	0.0	A0A2P5WEK6_GOSBA; Uncharacterized protein
STRING	Gorai.006G152400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	5e-67	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]