PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G1177
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 522aa    MW: 57668.8 Da    PI: 7.951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G1177genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12275320655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Gh_A09G1177 275 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 320
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-15272327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-12273322No hitNo description
Gene3DG3DSA:4.10.280.107.9E-14274326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9275320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5141928.281312521No hitNo description
SMARTSM001751.3E-72323479No hitNo description
TIGRFAMsTIGR002315.4E-24330472IPR005225Small GTP-binding protein domain
SMARTSM001743.7E-6331475No hitNo description
PRINTSPR004491.5E-23339355No hitNo description
SuperFamilySSF525401.16E-42342482IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3007.4E-54344521IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM001731.2E-10345479No hitNo description
CDDcd018681.02E-94345477No hitNo description
PfamPF000714.8E-46345477IPR001806Small GTPase superfamily
PRINTSPR004491.5E-23357379No hitNo description
PRINTSPR004491.5E-23419432No hitNo description
PRINTSPR004491.5E-23454476No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005525Molecular FunctionGTP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MDSSTPPSCQ NQNSQPNSEL LRFLSAPNSL LATFSESLDT GLSKGGPHSD RLTYRFMNPS  60
QDKSGTEATI DHANSRRTFP GLPPHYPRQT SSAMDTSYLL LGMDPRCGKP VTSSLLRQSS  120
SPPGLFTNLF VQTGEIAGLG SYTNGELSPS SSSNRLKNQI SFSSRLPSSL GILSQISEVV  180
DDAKLETGCQ YGSWNDSANF PENFSGSKTT QDNDSNFFSA NQNSASGSRL HVLSHHLSLP  240
KTSNETPAME KFLSFQDPVP CKIRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD  300
KQTNTADMLD LAVDYIKDLQ KQFKQLGNLS CLLVSPGTNS VWIQKATIGV EFQTKTLVID  360
NKTVKSQIWD TAAQERYRAV TSAYYRGAVG AMLVYDMTKR QSFDNMARWL EELRGHADQN  420
LVIMLVGNKC DLGSLRAVPT EDAQEFAQRE NLFFMETSAL ESTNVETAFF TVLTEIYRTI  480
SKKTLTANDE LDPNGNAALL KGTRIIVPNQ EMQKDSRGGC CG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ojk_A6e-6434549036184Ras-related protein Rab-11B
4ojk_B6e-6434549036184Ras-related protein Rab-11B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016669458.10.0PREDICTED: transcription factor bHLH130-like isoform X1
TrEMBLA0A1U8HZT40.0A0A1U8HZT4_GOSHI; transcription factor bHLH130-like isoform X1
STRINGGorai.006G140200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-75bHLH family protein