PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G1170
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 436aa    MW: 48887.2 Da    PI: 4.8565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G1170genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35e-1590141155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++  ++W A+I       k  k ++lg+f+t+eeAa+a++ a+ +l+g
  Gh_A09G1170  90 SIYRGVSRNSDFKKWQARIGKG----KDiKGIYLGTFDTEEEAARAYDVAAIRLKG 141
                  57****************9983....247************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.245155IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-9457IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-7456IPR001471AP2/ERF domain
SMARTSM003804.1E-5461IPR001471AP2/ERF domain
PfamPF008475.8E-1090141IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1790150IPR016177DNA-binding domain
CDDcd000181.53E-2190151No hitNo description
Gene3DG3DSA:3.30.730.104.4E-1891149IPR001471AP2/ERF domain
SMARTSM003806.5E-2291155IPR001471AP2/ERF domain
PROSITE profilePS5103217.4991149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MACRYTGRYE AFLWNNTDPT QKPKTGGYDD EVSAARAYDL AALKLWGELA PLNFPISNYK  60
SDLVEMKLYT KHEYFRNIRR KSRGFSKGVS IYRGVSRNSD FKKWQARIGK GKDIKGIYLG  120
TFDTEEEAAR AYDVAAIRLK GANAVTNFDI NQYDLNDILQ SSKLPIGKGA SKLLQKSSIE  180
DVIRKKRCVS DRNSLVYDEE DDSCTPNSNL DMNRIISSSL IYGFQNPDEF QASPTPIQGF  240
NSFGNYMSTD GNPSFNFNLE YPFNVNSDGN FTISGAAENY FGEMQPFEFS HNFSTLEKLH  300
QISSFPFLHP YHQNPVEFPE NLASNGLGNC VGTNREFTGS LQGLLTLQGQ DSLKYLDQPE  360
DVTTQNLPQN PINFQTIRVP VYPLSGSYNA EASSYGIFKE VPSTKENEND STGGNDESGQ  420
GAAMVEKPLL EKLEME
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609540.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A1U8HVS40.0A0A1U8HVS4_GOSHI; AP2-like ethylene-responsive transcription factor BBM
STRINGGorai.006G139300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17569610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.13e-63AP2 family protein